General information for g12512.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12512 is located on chr_1: 24208421..24209668 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12512 | g12512.t6 | isoform | g12512.t6 | 24200299 | 24206064 |
| chr_1 | g12512 | g12512.t6 | exon | g12512.t6.exon1 | 24200299 | 24201579 |
| chr_1 | g12512 | g12512.t6 | cds | g12512.t6.CDS1 | 24201514 | 24201579 |
| chr_1 | g12512 | g12512.t6 | exon | g12512.t6.exon2 | 24205446 | 24205568 |
| chr_1 | g12512 | g12512.t6 | cds | g12512.t6.CDS2 | 24205446 | 24205568 |
| chr_1 | g12512 | g12512.t6 | exon | g12512.t6.exon3 | 24205644 | 24205892 |
| chr_1 | g12512 | g12512.t6 | cds | g12512.t6.CDS3 | 24205644 | 24205892 |
| chr_1 | g12512 | g12512.t6 | exon | g12512.t6.exon4 | 24205954 | 24206064 |
| chr_1 | g12512 | g12512.t6 | cds | g12512.t6.CDS4 | 24205954 | 24206064 |
| chr_1 | g12512 | g12512.t6 | TSS | g12512.t6 | NA | NA |
| chr_1 | g12512 | g12512.t6 | TTS | g12512.t6 | NA | NA |
Sequences
>g12512.t6 Gene=g12512 Length=1764
ATTGATTCGAGTTTATTTCTGTGATTTCTTGTCTAAAAATATTAATTCTCCTTTCATAAC
GACATATGATGCCACACATAATACAAAGATAGAAAAATCAAGTCAAATGATGAGAGAATT
GCTATAAGTAAAAATGAAGATGCAAATAGCAGACAAATTTACTCAATTTTATTCCTTATT
TAATCTCCCACAAAATATTCGATGAAAAATAAAAGAAACTAAATTCAACTCGTATCGAGA
GTAAAAACTTCTCGAGAGAGAGTAAAAGAGAGAAAAAACATTCAATTTCATAACGAGTAA
AGAATCGCGTTGAAATACAAAAAAAAAAACATTTTTTGTGAGTCTTTTTTCTTCACAGCT
CTGCGGCATACTCGGCTATTTTTTCGCTTGTGAGTTTCAGTCTTGTTCGGCGAGCGTATT
TTGAAAGACGTAATAGAATATACAGAGCGCGAGAGAAAGAGAATTAAAGAATTTTTTAAA
AAGCCGGCATTATCAGACAGAAAATAGAGTAAATTGCACCGATCAGCGCAATTTGAAACA
AGGAAAAAGTTCATTCCCATCTCAAATAAACACGCGAATAAAGAATAAAAAGATGTAAGA
AAAGAATGGACATACATGCAAAACGCACAAACAATTTATCATGCAAGAAAATTAAATCAA
AGCAAATAGGAATTGCTAATTAATTGCTGAAGCGTTTTTTGAATAAAATTTTCATACATA
TAAATGATTGAAGCAAACCGAACGAGCGGCAAGATTAGTGTAATTCTCGAAAGAAAATAA
ATTTAAATTGAACGATTTAGAACTCGAGAAATAGAAAAACCACACGAGCGAGAAAGAAGA
GTCAAAAATTGCAAACGCGGTTTTTTTCAATTCTTGCTGCTTTCATTTGTGATAAAAATA
AAACACTAATTTTTTCTTCTCCTTCCTCTTTGATATCAAAATAAAAAATTTATAAGTGAG
TGTTGCTAAAATATAAACACAAATGTGATCATAAATTTCATTATTGCAACATTGTAATGC
GAATGAAGAAGAAAATGAAGTGGTAGAAAATATCGCGAGAACCTTGTATATTTGTACGAT
AATTTATATACGTAATTATTATCAAAGAGCGTTGCTTCATAATTGAAAGTGAGTGGTGAG
CAAGAAGAAAACGAGAGAGCGCTTGCTTGCACAAAAATTGTTTTATTATCAGTAAAAAAG
AGTGTGTCAGTGCAAATGAATGCTTGGAGGAGGCTGATAGAGTTACGACTCAAAAATAAC
AATAACATTGTTGTTGAAAAGTCTGGCGTAAATGGGAACGCTATAAGTGAGGGTAGTGAC
TTCTCAGAAGATCAAGATTCACCCAAAATCAACCACAAACCATTCTTCCGACGCCTTTCA
TTTAAAGCTTTACGAAAGGGAAAGGTACCGTTTCAAACGATATTTCAGAAACAGCATTCA
GATGATCTTGATGTATCGGGTTCGGGTCAAAATAAAAAGAAATTGGCTAAGATTGTTGTA
GAATGTCGAAAAGAAGGAAATGTAAATTACATTCCGCCCGAGTCTCTCGATCAAACAAAC
GACAACAACAAATGGGAAAAGTGTAGATTAGTGCTAGTTAAAACTGTAAGCGGATATATG
CTCGAGTTTTATAGTCCACCAAAAGCTCCAAAGCCTAAAAGCGGTCTTTTTTGTGGTGTC
TTGTGTGAAGCAAGACAAACAATTCCACTTGAAATGCCTGACAAGGAAAATACATTTGTG
CTTAAGGCAAATGATCAAGAATAT
>g12512.t6 Gene=g12512 Length=183
MNAWRRLIELRLKNNNNIVVEKSGVNGNAISEGSDFSEDQDSPKINHKPFFRRLSFKALR
KGKVPFQTIFQKQHSDDLDVSGSGQNKKKLAKIVVECRKEGNVNYIPPESLDQTNDNNKW
EKCRLVLVKTVSGYMLEFYSPPKAPKPKSGLFCGVLCEARQTIPLEMPDKENTFVLKAND
QEY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g12512.t6 | Gene3D | G3DSA:2.30.29.30 | - | 81 | 183 | 0 |
| 1 | g12512.t6 | PANTHER | PTHR10872 | SH2B ADAPTER PROTEIN | 20 | 181 | 0 |
| 2 | g12512.t6 | PANTHER | PTHR10872:SF2 | LNK, ISOFORM D | 20 | 181 | 0 |
| 3 | g12512.t6 | SUPERFAMILY | SSF50729 | PH domain-like | 85 | 181 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007165 | signal transduction | BP |
| GO:0035591 | signaling adaptor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
