General information for g12512.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12512 is located on chr_1: 24208421..24209668 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12512 | g12512.t8 | TSS | g12512.t8 | 24205445 | 24205445 |
| chr_1 | g12512 | g12512.t8 | isoform | g12512.t8 | 24205648 | 24206588 |
| chr_1 | g12512 | g12512.t8 | exon | g12512.t8.exon1 | 24205648 | 24205892 |
| chr_1 | g12512 | g12512.t8 | cds | g12512.t8.CDS1 | 24205857 | 24205892 |
| chr_1 | g12512 | g12512.t8 | exon | g12512.t8.exon2 | 24205954 | 24206459 |
| chr_1 | g12512 | g12512.t8 | cds | g12512.t8.CDS2 | 24205954 | 24206459 |
| chr_1 | g12512 | g12512.t8 | exon | g12512.t8.exon3 | 24206530 | 24206588 |
| chr_1 | g12512 | g12512.t8 | cds | g12512.t8.CDS3 | 24206530 | 24206587 |
| chr_1 | g12512 | g12512.t8 | TTS | g12512.t8 | 24207308 | 24207308 |
Sequences
>g12512.t8 Gene=g12512 Length=810
CGTTTCAAACGATATTTCAGAAACAGCATTCAGATGATCTTGATGTATCGGGTTCGGGTC
AAAATAAAAAGAAATTGGCTAAGATTGTTGTAGAATGTCGAAAAGAAGGAAATGTAAATT
ACATTCCGCCCGAGTCTCTCGATCAAACAAACGACAACAACAAATGGGAAAAGTGTAGAT
TAGTGCTAGTTAAAACTGTAAGCGGATATATGCTCGAGTTTTATAGTCCACCAAAAGCTC
CAAAGCCTAAAAGCGGTCTTTTTTGTGGTGTCTTGTGTGAAGCAAGACAAACAATTCCAC
TTGAAATGCCTGACAAGGAAAATACATTTGTGCTTAAGGCAAATGATCAAGAATATGTCA
TAGAAGCAAAAGACGCTGCAGACATGAAAAGTTGGCTTGCAACAATTCGATATTGCATGA
AAAGCACACCAACATCACAAATGCCGCCATCACTTCCACTCAACGATTCTTCCAATAATT
CATGTCTACTGAATGAAGCAGCATCGACTAATGCCCAAGCGTCTTCATCCGCAGCAGTGG
GAGCAACAAGTGCGGCAGCCTCAGATACATTAAATAATAGCTTAAATAATAATAATACAA
ACACTAATAATAACAATGTAAATAGCACAAATAATAATAATCAGCCTGAAATTCCTCCAC
GACGACCGGAGTCTTCAAGTCATTTTCATTTAGAGGAGGAAGATCTCTTACATGATTCTG
ACCTAACGGCGATGATGATGGAATATCCATGGTTTCATGGAACACTTGCTAGAAGTGATG
CTAGTGCAATGGTCCTTCATGGTGGAGTAT
>g12512.t8 Gene=g12512 Length=200
MLEFYSPPKAPKPKSGLFCGVLCEARQTIPLEMPDKENTFVLKANDQEYVIEAKDAADMK
SWLATIRYCMKSTPTSQMPPSLPLNDSSNNSCLLNEAASTNAQASSSAAVGATSAAASDT
LNNSLNNNNTNTNNNNVNSTNNNNQPEIPPRRPESSSHFHLEEEDLLHDSDLTAMMMEYP
WFHGTLARSDASAMVLHGGV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g12512.t8 | Gene3D | G3DSA:2.30.29.30 | - | 1 | 77 | 8.2E-30 |
| 5 | g12512.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 159 | - |
| 6 | g12512.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 151 | - |
| 2 | g12512.t8 | PANTHER | PTHR10872 | SH2B ADAPTER PROTEIN | 1 | 199 | 1.3E-50 |
| 3 | g12512.t8 | PANTHER | PTHR10872:SF2 | LNK, ISOFORM D | 1 | 199 | 1.3E-50 |
| 1 | g12512.t8 | Pfam | PF00169 | PH domain | 2 | 71 | 3.5E-6 |
| 8 | g12512.t8 | ProSiteProfiles | PS50003 | PH domain profile. | 1 | 71 | 8.512 |
| 4 | g12512.t8 | SUPERFAMILY | SSF50729 | PH domain-like | 1 | 74 | 4.76E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007165 | signal transduction | BP |
| GO:0035591 | signaling adaptor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
