General information for g12529.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12529 is located on chr_1: 24266317..24267717 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12529 | g12529.t3 | TSS | g12529.t3 | 24266215 | 24266215 |
| chr_1 | g12529 | g12529.t3 | isoform | g12529.t3 | 24266317 | 24267717 |
| chr_1 | g12529 | g12529.t3 | exon | g12529.t3.exon1 | 24266317 | 24266857 |
| chr_1 | g12529 | g12529.t3 | cds | g12529.t3.CDS1 | 24266807 | 24266857 |
| chr_1 | g12529 | g12529.t3 | exon | g12529.t3.exon2 | 24266916 | 24267424 |
| chr_1 | g12529 | g12529.t3 | cds | g12529.t3.CDS2 | 24266916 | 24267424 |
| chr_1 | g12529 | g12529.t3 | exon | g12529.t3.exon3 | 24267484 | 24267598 |
| chr_1 | g12529 | g12529.t3 | cds | g12529.t3.CDS3 | 24267484 | 24267598 |
| chr_1 | g12529 | g12529.t3 | exon | g12529.t3.exon4 | 24267670 | 24267717 |
| chr_1 | g12529 | g12529.t3 | cds | g12529.t3.CDS4 | 24267670 | 24267717 |
| chr_1 | g12529 | g12529.t3 | TTS | g12529.t3 | 24267866 | 24267866 |
Sequences
>g12529.t3 Gene=g12529 Length=1213
ATGGATTTTGCAAAAGAGATACAAGAAAACTTCACTATTTATCGTAAAATTGGCATAAAA
ATTAAAAATTTCGCTAAATTAAAAAAAGATGCGGTCGAATTAATGAAAACTCGTTATTAT
GATGCTGATAGTATAAAAATAAATGAAACACTACCACTTTGCGAACATACACAATTAAAA
ATGTAAGTCAATTATAATTTTGTGGAATTTAAGGTACTACTATTTAATCATAACTTTCAG
TTACTTGTCTCTTGAATATGATTGCAGACTTTATTTTGGAACTAGTATAAAACATTCATC
ACCTGTTGCTACGGATTATTGCGTTTGTCGTTTTAAAGAACTATTTCAAGAACGTTATAC
TTCTGATTCTGATGATGATGAATTTTTTAAACCAACTTGTGTTGATAATATAGAGTGCAA
AGTTTATTTTGAAGACAGGCACATTTCTCTTAATTGTGATGATTATGACGATAAGTTATA
CTGGAATCTCATGAATAAAAGCATAGATGAACAACAAGAAGACATTTATATTGTTATTAA
ATTCGAATATACATTTAAAAGCATACGATACATTCCAAAATTATTTAAGGATTTTTTGGG
AAACAATCATTTTAATGACATCAAGTTAATTTGCTCCGACAACAATATTGTTCAAGCGAG
TGCTGTTATTCTAGCTAGATTCTCTTCTGTTTTTAAAGCAATGTTCGAAAGTAAAATGAT
AGAAAATCAAACAAAGGTCGTTAGAATTTCTGATATCAATTCGAGGACTATGAAACAACT
CATTGACTTTATTTACACTGCTGAAATTAAAAACGTCAATGAGAATTTAAATGCACTTCT
TTATACTGCAGAGAAGTATGATGTAAAAGATCTAAAATGTGTGTGTATCAATGAAGTCAA
GAAGGAACTTGAGTGTTTATGTAACAATGAAGACAAGTACTTGATGAACGAGGAGCAACA
GTTAATCAGAACTATTTACAAAACTCTGGTATTTGCAGACAAATACAATGCTAAACTTTT
GTTCTTCGAAGTTGTTGGAATCTTTTATTACTATTTTCATGATTTCGATCAAATAAGAGC
ATTCGTAGTGCCAAATAAAGGAATTATGAACAAAATTATTGCATTCAAAGAATCATTAGT
AAAAAAGCTTACATTCACATACGTGAATAAAGATAGCGATGATGAGCCTCCAGAAAAACG
CCCTCGCACATAA
>g12529.t3 Gene=g12529 Length=240
MNKSIDEQQEDIYIVIKFEYTFKSIRYIPKLFKDFLGNNHFNDIKLICSDNNIVQASAVI
LARFSSVFKAMFESKMIENQTKVVRISDINSRTMKQLIDFIYTAEIKNVNENLNALLYTA
EKYDVKDLKCVCINEVKKELECLCNNEDKYLMNEEQQLIRTIYKTLVFADKYNAKLLFFE
VVGIFYYYFHDFDQIRAFVVPNKGIMNKIIAFKESLVKKLTFTYVNKDSDDEPPEKRPRT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g12529.t3 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 41 | 123 | 0.000 |
| 6 | g12529.t3 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 25 | 185 | 0.000 |
| 2 | g12529.t3 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 27 | 180 | 0.000 |
| 3 | g12529.t3 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 27 | 180 | 0.000 |
| 1 | g12529.t3 | Pfam | PF00651 | BTB/POZ domain | 32 | 138 | 0.000 |
| 7 | g12529.t3 | ProSiteProfiles | PS50097 | BTB domain profile. | 42 | 110 | 15.763 |
| 5 | g12529.t3 | SMART | SM00225 | BTB_4 | 42 | 140 | 0.000 |
| 4 | g12529.t3 | SUPERFAMILY | SSF54695 | POZ domain | 28 | 136 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
