Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Zinc finger and BTB domain-containing protein 49.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12552 g12552.t1 isoform g12552.t1 24371870 24373300
chr_1 g12552 g12552.t1 exon g12552.t1.exon1 24371870 24372013
chr_1 g12552 g12552.t1 cds g12552.t1.CDS1 24371870 24372013
chr_1 g12552 g12552.t1 exon g12552.t1.exon2 24372074 24373300
chr_1 g12552 g12552.t1 cds g12552.t1.CDS2 24372074 24373300
chr_1 g12552 g12552.t1 TTS g12552.t1 24373345 24373345
chr_1 g12552 g12552.t1 TSS g12552.t1 NA NA

Sequences

>g12552.t1 Gene=g12552 Length=1371
ATGGAACTAAACGAAACAGAAAGAGAACTTAAAGATAATTTAAACAAGTGCAGATGTTGT
TTTCGAATGATAATAAATTTGCGTGGAGCTGTGGAAATAGATGAAAATATTCAAACTCAA
TTTTTTCAACTAACTTCAATTGATCTCATAACATCTGAATGTTTTTCTAATCGAATATGT
CAACTATGTGCTAATGATCTACAAAGTTTTGTTCAACTTCGTGAAGATTTAATAGCAAAA
CAAACTCAACTTTATTCATTAGCTGGATTAGATATAGAAAGTATGCAAGAAACTCATTTA
AATGATGATGCTACTGAAGTAGAAGCAAATGAAGATACCAATTATGATGTAAATTATGAG
TCTGTAGAAGATTATGAAAGTGAAATGCTTGAAGAAGTTATTGAAGAGAATGAATTTGCA
ACAGAAGATGATACTACAGAATCTAATCTAAAAATTCTCAAAATTGAAAAAATTACTAGT
GCAGACGATGTACTGGTTAACGATGATTTACAAGAATCATCTGATTGTTATGGTGAAGAA
AATAGTAAAATAATTTATGGTTCAAATGTAATACTAGTTAATAAACCTGATGTCAAGGAT
GAAGAAGATGTACATTGTGAAATGTGCAAAATTAATGTTCCTCAAAGTTTTTATGATGAA
CATATTGAAACAATGCATTCATATGACTATCTAAGTTGTGAGAAATGTGATCAAAGCTTT
TACAGTAAAATTGCATTAAGAAGGCATGTTTATGATGAGCATGTTCCGCGGAGTAGCAAT
GAGAAAAAGAAAAAGAAACTTCAATATTGTCCATTATGCACGAAAGAATATGACTACAAG
AAGCAACTTAATGATCATATTCGTTCATTTCACAAGAAAGAGAGAAATACTCAATGCGAT
ATATGCAACAGAAAATTCTATCATCGTGATTTAAAGAAGCACATTGAGCATGTTCATGGA
GAAAAGACATTAACTTGTGAAGTTTGCGGTCGTAAATATTCTTGCTATGACAATCTCAAA
TTGCATATGCGTTATCATCAAGTTCCAAAATATATTTGCAAAGTTGAAGGATGTGGAAAA
AGATTTCATCAAAAATCATTGTTAGAACATCACAAAGTAAAACATACGGATAAGAAACAA
ATTGAATGCAAAGAATGTAGCAGTAATTTCTTCACTATTCGTGATCTCAAACGTCATGTT
CAGCGTGTGCATGAGAAAGTATATCGACAGTGTGCTGTGTGTGAAATGACTTTCTGCCGT
AAGGATAAATATCGCGAACATATTCTCAAATCACATAAAAATTTACCCGTGAATGAACGT
GATTCTATTTTGGATGAAATTAAGAAACTTAATTGGTATGAGAAGGAATAA

>g12552.t1 Gene=g12552 Length=456
MELNETERELKDNLNKCRCCFRMIINLRGAVEIDENIQTQFFQLTSIDLITSECFSNRIC
QLCANDLQSFVQLREDLIAKQTQLYSLAGLDIESMQETHLNDDATEVEANEDTNYDVNYE
SVEDYESEMLEEVIEENEFATEDDTTESNLKILKIEKITSADDVLVNDDLQESSDCYGEE
NSKIIYGSNVILVNKPDVKDEEDVHCEMCKINVPQSFYDEHIETMHSYDYLSCEKCDQSF
YSKIALRRHVYDEHVPRSSNEKKKKKLQYCPLCTKEYDYKKQLNDHIRSFHKKERNTQCD
ICNRKFYHRDLKKHIEHVHGEKTLTCEVCGRKYSCYDNLKLHMRYHQVPKYICKVEGCGK
RFHQKSLLEHHKVKHTDKKQIECKECSSNFFTIRDLKRHVQRVHEKVYRQCAVCEMTFCR
KDKYREHILKSHKNLPVNERDSILDEIKKLNWYEKE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
24 g12552.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 219 296 5.8E-8
23 g12552.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 297 349 8.9E-9
25 g12552.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 351 372 4.1E-6
26 g12552.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 373 442 2.6E-8
2 g12552.t1 PANTHER PTHR24377 IP01015P-RELATED 150 433 1.4E-37
3 g12552.t1 PANTHER PTHR24377:SF809 IP01015P-RELATED 150 433 1.4E-37
1 g12552.t1 Pfam PF00096 Zinc finger, C2H2 type 269 291 0.0095
19 g12552.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 233 254 -
18 g12552.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 270 291 -
21 g12552.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 326 346 -
22 g12552.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 353 375 -
20 g12552.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 383 404 -
17 g12552.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 411 432 -
31 g12552.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 231 259 9.182
29 g12552.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 268 296 9.743
30 g12552.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 324 351 10.554
28 g12552.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 351 380 12.321
27 g12552.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 381 404 9.162
8 g12552.t1 SMART SM00868 zf_AD_2 16 87 0.0047
10 g12552.t1 SMART SM00355 c2h2final6 204 226 130.0
9 g12552.t1 SMART SM00355 c2h2final6 231 254 0.0022
12 g12552.t1 SMART SM00355 c2h2final6 268 291 0.68
16 g12552.t1 SMART SM00355 c2h2final6 297 319 5.1
13 g12552.t1 SMART SM00355 c2h2final6 324 346 0.018
11 g12552.t1 SMART SM00355 c2h2final6 351 375 0.0066
15 g12552.t1 SMART SM00355 c2h2final6 381 404 0.14
14 g12552.t1 SMART SM00355 c2h2final6 409 432 0.55
4 g12552.t1 SUPERFAMILY SSF57716 Glucocorticoid receptor-like (DNA-binding domain) 16 86 2.14E-5
7 g12552.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 267 309 1.36E-5
5 g12552.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 294 347 1.99E-7
6 g12552.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 351 401 1.54E-8

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:0008270 zinc ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values