Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative 3’(2’),5’-bisphosphate nucleotidase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12557 g12557.t5 TSS g12557.t5 24379401 24379401
chr_1 g12557 g12557.t5 isoform g12557.t5 24379448 24380754
chr_1 g12557 g12557.t5 exon g12557.t5.exon1 24379448 24380224
chr_1 g12557 g12557.t5 cds g12557.t5.CDS1 24379582 24380224
chr_1 g12557 g12557.t5 exon g12557.t5.exon2 24380322 24380754
chr_1 g12557 g12557.t5 cds g12557.t5.CDS2 24380322 24380386
chr_1 g12557 g12557.t5 TTS g12557.t5 24380756 24380756

Sequences

>g12557.t5 Gene=g12557 Length=1210
ATGACTACACCTCTTATTATGAGAGTTATGGTAAGAGTTTAAAAAAGATTTCTAAGAATT
TTCATTCACTTTTTTCATTTAAGGCAAGCGGCCTCTCTATTGCAGAGAAGGCAGGCGAAG
TTATCAGAGAAATTATGCTGAAAGGTGATTTGAATGTTGTTGATAAAGGTCAAAAAAATT
ATGATCCACAAACAGAAGCTGATCGTAAATGTCAGCAAATGATTATCGGCTCACTTTCAA
ATCATTTCAAAAATCTTCGTATTATTGGGGAAGAGGGAGAAGAAGATGTGAGTAAAATTC
CAAAAGATTTGATTGTCGAACAGTTTGATACAAAGTTCCTTGAACAATATAAATGCCCTG
AAGCATTTACTGACATTGCTGAGAATGATTTAGTCGTGTGGATTGACCCTTTGGACGGAA
CCAACGAATTTGTTGAGGGATTAATTGAAAATGTCACTGTATTGATTGGCATTGCATACA
GAGAAGCATCAATAGGAGGAATCATTCATCAGCCATTCTTCAAATGCTCAACAACTAATA
AAATGGGAAGAACCATATGGGGACTGAAAGAGCTTGGCACAGGCGGATATGTAAGAAAAA
GTCCTCCAGAAAATAAATTTATTGTAACAACCACACGATCTCATTCAAATGAAATTGTCA
AAGCAACAATTGAAGCAATCAAAGCAGATCAAGTTTTAAGAGTCGGTGGATGTGGTTTCA
AAGTATTGCAATTGCTCGAAGGAAAAGCTCATTGTTATGTCTTTGCATCACCCGGATTGT
TGAATATCCTAACAAACAAGGTGTGCTTGCAACAGCTAAAGGAATTGATCATGATGCTTT
AATTGAAAAAATTCCACAAAGCACAAAAGATTCATTGGGTACGAAAAAGTAAAGAGATTT
TAAATTCGAAAAGGAAAACAGGTGGTTGGGAAAGAATCAAAGCCGTGAAGTAAAAAATTA
TTTTCTTATCAATAAAAAATTTCATACAATTTCGGGAAATCCATATTATCGTAGTCTGTA
ATTTTAAAGATAAATTGCTTGCATAATATAAAATTACTTGATAATATTATGAAGTCATTG
ATAAAGCTGACTTCATCATAAAATATGTCTATATAAAAATTGTACCTATGTCAAAATGCT
TGGAGCTTTTGCTGAAAAATTCATTGCAATAAAATATTTAATCAGCAATAGTAAACAGCT
ACGAAACAGC

>g12557.t5 Gene=g12557 Length=235
MLKGDLNVVDKGQKNYDPQTEADRKCQQMIIGSLSNHFKNLRIIGEEGEEDVSKIPKDLI
VEQFDTKFLEQYKCPEAFTDIAENDLVVWIDPLDGTNEFVEGLIENVTVLIGIAYREASI
GGIIHQPFFKCSTTNKMGRTIWGLKELGTGGYVRKSPPENKFIVTTTRSHSNEIVKATIE
AIKADQVLRVGGCGFKVLQLLEGKAHCYVFASPGLLNILTNKVCLQQLKELIMML

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g12557.t5 Gene3D G3DSA:3.30.540.10 - 1 151 0
6 g12557.t5 Gene3D G3DSA:3.40.190.80 - 153 217 0
2 g12557.t5 PANTHER PTHR43028 3’(2’),5’-BISPHOSPHATE NUCLEOTIDASE 1 3 214 0
3 g12557.t5 PANTHER PTHR43028:SF5 3’(2’),5’-BISPHOSPHATE NUCLEOTIDASE 1 3 214 0
1 g12557.t5 Pfam PF00459 Inositol monophosphatase family 5 212 0
4 g12557.t5 SUPERFAMILY SSF56655 Carbohydrate phosphatase 14 213 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046855 inositol phosphate dephosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed