General information for g12610.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Aminoacylase-1.
Parent gene
- The parent gene g12610 is located on chr_1: 24782653..24783615 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12610 | g12610.t3 | TTS | g12610.t3 | 24782001 | 24782001 |
| chr_1 | g12610 | g12610.t3 | isoform | g12610.t3 | 24782653 | 24783615 |
| chr_1 | g12610 | g12610.t3 | exon | g12610.t3.exon1 | 24782653 | 24783245 |
| chr_1 | g12610 | g12610.t3 | cds | g12610.t3.CDS1 | 24782653 | 24783245 |
| chr_1 | g12610 | g12610.t3 | exon | g12610.t3.exon2 | 24783531 | 24783615 |
| chr_1 | g12610 | g12610.t3 | cds | g12610.t3.CDS2 | 24783531 | 24783615 |
| chr_1 | g12610 | g12610.t3 | TSS | g12610.t3 | 24783710 | 24783710 |
Sequences
>g12610.t3 Gene=g12610 Length=678
ATGAGTGCCTACGAAAGTAATGAAGAAATTCAAATTTTTCGTGAATATCTGAGAATCCCA
AGTGTTCATCCGAACATTGATTATGAACCATGTGTGGAATTTTTAAGACGACAAGCGAGT
GATTTGGATTTAGAATTTCGTGTTGAATATCCAAAAACTGAGAAGAAACCAGTTGTAATT
TTAACATGGATTGGAACTCAACCAGAATTGCCATCGATCATTCTTAATTCTCATATGGAT
GTTGTGCCAGTTTTTGAAGAATTTTGGACTCACAAGCCATTTGATGCTGATATTGATGAA
AATGGAAAAATTTTTGCTCGTGGTTCGCAAGATATGAAATGTGTTGGCACTCAATATTTG
GGTGCATTGAGATACTTCAAGAGAAATAATATTCAATTTAAAAGAACAATCCATGCAACA
TTTTTACCAGAAGAAGAAGTCGGTGGTGTTGAAGGAATGCGTGATTTTATTCATACTGAT
TCGTTTAAAAAATTAAATGCTGGCTTTTCACTTGATGAAGGTATTGCAAGTCCAACTGAT
ACTTTTAATGTCTTTTATGCTGAACGATCAATTTGGCATATTCAATTTGAAATTCCTGGA
AACCCAGGACATGGAAGTTTGCTATTGAAAAATACAGCTGGTGAAAAACTTGAGAAACTT
TTGAATCGCTTTATTGAA
>g12610.t3 Gene=g12610 Length=226
MSAYESNEEIQIFREYLRIPSVHPNIDYEPCVEFLRRQASDLDLEFRVEYPKTEKKPVVI
LTWIGTQPELPSIILNSHMDVVPVFEEFWTHKPFDADIDENGKIFARGSQDMKCVGTQYL
GALRYFKRNNIQFKRTIHATFLPEEEVGGVEGMRDFIHTDSFKKLNAGFSLDEGIASPTD
TFNVFYAERSIWHIQFEIPGNPGHGSLLLKNTAGEKLEKLLNRFIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g12610.t3 | Gene3D | G3DSA:3.40.630.10 | Zn peptidases | 3 | 196 | 0 |
| 2 | g12610.t3 | PANTHER | PTHR45892 | AMINOACYLASE-1 | 4 | 225 | 0 |
| 3 | g12610.t3 | PANTHER | PTHR45892:SF1 | AMINOACYLASE-1 | 4 | 225 | 0 |
| 1 | g12610.t3 | Pfam | PF01546 | Peptidase family M20/M25/M40 | 74 | 169 | 0 |
| 4 | g12610.t3 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 7 | 189 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01293 (Gly-Xaa carboxypeptidase)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
