General information for g12611.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12611 is located on chr_1: 24784989..24787293 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12611 | g12611.t2 | isoform | g12611.t2 | 24784174 | 24785447 |
| chr_1 | g12611 | g12611.t2 | exon | g12611.t2.exon1 | 24784174 | 24784698 |
| chr_1 | g12611 | g12611.t2 | exon | g12611.t2.exon2 | 24784760 | 24785447 |
| chr_1 | g12611 | g12611.t2 | cds | g12611.t2.CDS1 | 24784972 | 24785211 |
| chr_1 | g12611 | g12611.t2 | TSS | g12611.t2 | NA | NA |
| chr_1 | g12611 | g12611.t2 | TTS | g12611.t2 | NA | NA |
Sequences
>g12611.t2 Gene=g12611 Length=1213
GAATTGCATCACCAACAGATACATTCAATGTTTTCTATGCAGAAAGATGTATATGGCACA
TAATCTTTACAATCAATGGGAATAATGGTCATGGCGCACTTTTACTAAAAGACACTGCAC
CAGAAAAGCTTCGTAAAATTTTAGACAGATTTTATGACTTTCGCGATACTCAAGTGAAAA
AACTATTGGAAAATCCAGATTTGACAATTGGTGATGTTACAACTGTTAATATAACAATGA
TAAATGGCGGTGTACAATTGAACACAGTTCCACCAGAAATTCGTGTTATGACAGACATTC
GTTTAGCTGTTGATGTTGATCATGAACAATTTGAAAATATGGTAAAAAGCTGGTGCATTG
AAGCTGGCAATGTTGAATATGAATTTGATCTCAAAGATCCCTTCATTCCACCAACAAAAC
TTGATGAATCAAATATTTATTGGCATGCATTTAAATCAGCTGTTAGCGAAGCGTAAGTTT
TTTTTTCTTATCTCAATTTCTGACCACAATTTACGAAATTTTTTATTCTATTTTAAACCA
TAGAAATATAAAAACCAAAGTTCAAGTTTTTCCTGGTGGAACTGATTCTCGATATTTGAG
AAGCGTCGGAATTCCTGCAATCGGTTTCAGTCCAATGAATAATACTCCTGTTTTACTTCA
TGATCATGATGAGTTCCTTCAAGCCGATCTTACTTAAACTTTTATCCAAAAATGGGCTTT
AAACAGCTTAAGAATTAACAAAAATGAAAAATATTGTTATGAGGTTGTGTTCAAATTTTT
TTGTGGTGTTATTAAAATACGCAGTACAATAAACCAAAATATTCTATTTTATCGCATATA
AAATAGTGTTCTTTGTGCAACATTATAATTTTCAGATAAATAAAAATTAACGTCATAAAA
GTAAAGACTAATGAGTGAATTTCTCTTTATAAAATATGATGACATTTGATAACAAAGAAT
TTTGTATGTACAGTACAGTAGTTTTATTGACGTTAATTTATTTAAATTTTTATTATGAAT
GTCTGTTATTGTTTTCTCTTTGTTTTTACTTTGGTTTTGCTATAATGAATTTTTAATACA
TTTTTATTGTTTTATATATTTTGACGCCATTTGAAATTTAATTTTTGAAAACTCGAAAAT
CACACAGAATTAAGATCTATATTAAAACATCAAAGTTATTCCTACTGCTTTTACTCAATA
ATTTTATTTTACC
>g12611.t2 Gene=g12611 Length=79
MINGGVQLNTVPPEIRVMTDIRLAVDVDHEQFENMVKSWCIEAGNVEYEFDLKDPFIPPT
KLDESNIYWHAFKSAVSEA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g12611.t2 | Gene3D | G3DSA:3.30.70.360 | - | 1 | 54 | 0.00e+00 |
| 2 | g12611.t2 | PANTHER | PTHR45892 | AMINOACYLASE-1 | 1 | 78 | 0.00e+00 |
| 3 | g12611.t2 | PANTHER | PTHR45892:SF1 | AMINOACYLASE-1 | 1 | 78 | 0.00e+00 |
| 1 | g12611.t2 | Pfam | PF07687 | Peptidase dimerisation domain | 1 | 42 | 2.30e-04 |
| 4 | g12611.t2 | SUPERFAMILY | SSF55031 | Bacterial exopeptidase dimerisation domain | 1 | 58 | 1.33e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
