Gene loci information

Transcript annotation

  • This transcript has been annotated as Aminoacylase-1A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12611 g12611.t4 TTS g12611.t4 24784552 24784552
chr_1 g12611 g12611.t4 isoform g12611.t4 24784700 24787293
chr_1 g12611 g12611.t4 exon g12611.t4.exon1 24784700 24784904
chr_1 g12611 g12611.t4 cds g12611.t4.CDS1 24784700 24784904
chr_1 g12611 g12611.t4 exon g12611.t4.exon2 24784976 24785447
chr_1 g12611 g12611.t4 cds g12611.t4.CDS2 24784976 24785447
chr_1 g12611 g12611.t4 exon g12611.t4.exon3 24785580 24785760
chr_1 g12611 g12611.t4 cds g12611.t4.CDS3 24785580 24785760
chr_1 g12611 g12611.t4 exon g12611.t4.exon4 24786316 24786569
chr_1 g12611 g12611.t4 cds g12611.t4.CDS4 24786316 24786569
chr_1 g12611 g12611.t4 exon g12611.t4.exon5 24786822 24787052
chr_1 g12611 g12611.t4 cds g12611.t4.CDS5 24786822 24786951
chr_1 g12611 g12611.t4 exon g12611.t4.exon6 24787124 24787293
chr_1 g12611 g12611.t4 TSS g12611.t4 24787291 24787291

Sequences

>g12611.t4 Gene=g12611 Length=1513
CAAGAGAGAAAAAGCGAAGTACAAAACAAGAAAAAAGTTTTTCGCGAGAAAATTTTTCGC
AAAAAATCTGAGTTAAGAAAAGTATTTTCAATAGTGCTTTTCTTCTCTGATAGCGTGTGT
GTTGTCGCTCTTGATTTTCATTAATCAATAGTAATTCATAGTTCAAGAAGAAATAGAAAT
TTCAGAATCAGCAGAAAATTGGAGCACCACATAAAACTATCACACAATAAATTAACATAA
AAGTGGGTCAGCGGAAATTTTTAATTTTAAAATGGAGTGCAATTTGATTTTGAGAGATGA
AGAGAAGAACAAACAATATCAAAATTGGGAAAATAATGAAGAAATTCAGATTTTTCGCGA
ATACTTGCGAATACCGACAGTGCATCCAAACATTGATTACCGCGATTGTGTTCGTTTTTT
GTTTCGACTCGCTGATGAGATTGGCTTGAGTGCGAAAATCTTCTATCCCATAGAGAAAAG
TAAGCCGGTTGTTGTGCTTACTATGCTTGGCACAAATCCAGAACTCAAGTCCATTATTTT
AAATTCTCATATGGACGTTGTTCCGGTTTTTGAAGAATACTGGACTCACAAGCCATTTGA
TGCTGAAATGGATGAAGAAGGGAGAATTTTTGCTCGTGGTGCACAAGACATGAAGTGTTG
TGGAATGCAATATTTATCAGCACTCAGATACTTCAAAAGAAAAAATATACAGTTCAAACG
AACAATTCATGTTGTTTTTGTGCCAAATGAAGAACTAGGTGGTCAAGGTGGAATGGCTGA
TTTTGTTCATACAACAGAATTCCGAGCTCTTAATTGTGGATTTTCACTTGATGAAGGAAT
TGCATCACCAACAGATACATTCAATGTTTTCTATGCAGAAAGATGTATATGGCACATAAT
CTTTACAATCAATGGGAATAATGGTCATGGCGCACTTTTACTAAAAGACACTGCACCAGA
AAAGCTTCGTAAAATTTTAGACAGATTTTATGACTTTCGCGATACTCAAGTGAAAAAACT
ATTGGAAAATCCAGATTTGACAATTGGTGATGTTACAACTGTTAATATAACAATGATAAA
TGGCGGTGTACAATTGAACACAGTTCCACCAGAAATTCGTGTTATGACAGACATTCGTTT
AGCTGTTGATGTTGATCATGAACAATTTGAAAATATGGTAAAAAGCTGGTGCATTGAAGC
TGGCAATGTTGAATATGAATTTGATCTCAAAGATCCCTTCATTCCACCAACAAAACTTGA
TGAATCAAATATTTATTGGCATGCATTTAAATCAGCTGTTAGCGAAGCAAATATAAAAAC
CAAAGTTCAAGTTTTTCCTGGTGGAACTGATTCTCGATATTTGAGAAGCGTCGGAATTCC
TGCAATCGGTTTCAGTCCAATGAATAATACTCCTGTTTTACTTCATGATCATGATGAGTT
CCTTCAAGCCGATGTCTACCTCAGAGGAATTGAAATTTATAAGAAAATTATTAGCAAAGT
TGCAAATTGCTAA

>g12611.t4 Gene=g12611 Length=413
MECNLILRDEEKNKQYQNWENNEEIQIFREYLRIPTVHPNIDYRDCVRFLFRLADEIGLS
AKIFYPIEKSKPVVVLTMLGTNPELKSIILNSHMDVVPVFEEYWTHKPFDAEMDEEGRIF
ARGAQDMKCCGMQYLSALRYFKRKNIQFKRTIHVVFVPNEELGGQGGMADFVHTTEFRAL
NCGFSLDEGIASPTDTFNVFYAERCIWHIIFTINGNNGHGALLLKDTAPEKLRKILDRFY
DFRDTQVKKLLENPDLTIGDVTTVNITMINGGVQLNTVPPEIRVMTDIRLAVDVDHEQFE
NMVKSWCIEAGNVEYEFDLKDPFIPPTKLDESNIYWHAFKSAVSEANIKTKVQVFPGGTD
SRYLRSVGIPAIGFSPMNNTPVLLHDHDEFLQADVYLRGIEIYKKIISKVANC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g12611.t4 CDD cd05646 M20_AcylaseI_like 21 411 0.0
8 g12611.t4 Gene3D G3DSA:3.40.630.10 Zn peptidases 15 208 1.7E-55
7 g12611.t4 Gene3D G3DSA:3.30.70.360 - 209 321 2.5E-19
9 g12611.t4 Gene3D G3DSA:3.30.70.1640 - 333 413 5.5E-37
3 g12611.t4 PANTHER PTHR45892 AMINOACYLASE-1 13 412 2.2E-161
4 g12611.t4 PANTHER PTHR45892:SF1 AMINOACYLASE-1 13 412 2.2E-161
10 g12611.t4 PIRSF PIRSF036696 ACY-1 14 413 1.0E-181
2 g12611.t4 Pfam PF01546 Peptidase family M20/M25/M40 89 408 1.5E-37
1 g12611.t4 Pfam PF07687 Peptidase dimerisation domain 202 308 1.4E-10
12 g12611.t4 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 124 163 -
5 g12611.t4 SUPERFAMILY SSF53187 Zn-dependent exopeptidases 13 411 4.59E-57
6 g12611.t4 SUPERFAMILY SSF55031 Bacterial exopeptidase dimerisation domain 207 308 7.63E-11
13 g12611.t4 TIGRFAM TIGR01880 Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase 18 412 1.2E-170

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF
GO:0006520 cellular amino acid metabolic process BP
GO:0004046 aminoacylase activity MF
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values