General information for g12619.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12619 is located on chr_1: 24815549..24817535 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12619 | g12619.t1 | isoform | g12619.t1 | 24812328 | 24817535 |
| chr_1 | g12619 | g12619.t1 | exon | g12619.t1.exon1 | 24812328 | 24812446 |
| chr_1 | g12619 | g12619.t1 | cds | g12619.t1.CDS1 | 24812328 | 24812446 |
| chr_1 | g12619 | g12619.t1 | exon | g12619.t1.exon2 | 24812737 | 24817030 |
| chr_1 | g12619 | g12619.t1 | cds | g12619.t1.CDS2 | 24812737 | 24817030 |
| chr_1 | g12619 | g12619.t1 | exon | g12619.t1.exon3 | 24817095 | 24817280 |
| chr_1 | g12619 | g12619.t1 | cds | g12619.t1.CDS3 | 24817095 | 24817280 |
| chr_1 | g12619 | g12619.t1 | exon | g12619.t1.exon4 | 24817370 | 24817462 |
| chr_1 | g12619 | g12619.t1 | cds | g12619.t1.CDS4 | 24817370 | 24817462 |
| chr_1 | g12619 | g12619.t1 | exon | g12619.t1.exon5 | 24817533 | 24817535 |
| chr_1 | g12619 | g12619.t1 | cds | g12619.t1.CDS5 | 24817533 | 24817535 |
| chr_1 | g12619 | g12619.t1 | TSS | g12619.t1 | 24817550 | 24817550 |
| chr_1 | g12619 | g12619.t1 | TTS | g12619.t1 | NA | NA |
Sequences
>g12619.t1 Gene=g12619 Length=4695
ATGAATCATCAGGATTTAATAGAAACAGCGTCCAAGGATGAGTGGACGTTGGAGTGTGAT
AAAAAAATGCTCGATATGATGCAAAATATTGCATCGAAAATAGAAAATCGTGCAACAAAC
ACAAAAAATAAAATGAATGCAATGATTCTCAATTTGGATGAGACGAAAGTAAAAATGAGT
AATTTAACACGCATAAATGATGTTAAAAATTCAGTCTTTTGTGAAAATTTAATTACGGAT
GATCATTTAGAACCAATAAATGAAGTGCCTAAAACAAATGCAGTCAAACTGTTATCAACA
CAAATACCCATTGAAAATGGATTAAAACTTATGGATAATTGTTTTGAGAAACATCGAGTG
AATTTTAACCCAAGTGAAAGTCGAAGTGAAACATCAATAGTTTATAGACCAGTCGATAAA
TTTTATAGTTCACTGCCCTATTTAATCGGATCAGATAAATGGAAAGAAAAATGGCATTTA
GGATTAATTGAAGAGGACAAAGTGTCACAAACTGGATCAACTTATGCCGAATCAAGCGGA
TCAAATGCAACTCAAAATATTGAAAATAATTTAGCAACTGCATCAAGTTTAATGGCATCA
AATGATAGTTTAGCAAAATCATCAAGTTCAATTGGTGACCAAATGGTGATAAATAAGCCA
ACTGGTCTTTTTGATGAACTCTATGATGAATCTAAAGAAACTGCTACAATTTCACAACCA
ACTTCTTCATTCTTTAGACCACAACCAGCTGAAAGAAAAATTGTGAATTTATTTGATGAT
GAACCACCTGAACTTGATGATTCTTCATATAATGCAAGAAAACCAGTAAATTTATTTGAA
GATGATTATCAATCAGTTGCATCACTGCCAATGAATGAAGATAAAGTCGATAATTCACAA
TTTCAACCTCCACCACCTGTTGATATTTTCAATGAAAATGAATTTGATGATTTTATAAAG
AGAATGGAAAATAGAAACCAACAGCCAAGTGAAATTGTTGATGATGTTAAAGAAAAAGTT
ACTGCTGTGAATAGTGGTGGTGTGCAGCGTGATATGAAATTGATTGCTGATGAAATTAAA
AAAGTGCAATTAAAGAAAAAAAGTGAAGATGTTGATGTTAGTGAAAATGAGCAGACTAAA
GTGATTAAACCAAAAGTCCATGAACAAATGATTGCTCAATCTGTAAAAGTTTTACCTGAA
GTTAAAAAAGTTGAACCTAAAGAAATGAAAAATACTACTCCACAACCTTTTATGCCTGTG
ACTCAACAAAAGTCTTCTTCTCAACCACAACAACAATCTATTCCTAAATCACGGCCTAAA
ATTGCAAATCTTTTTGATGACGACGAAGATGATGAAGATTTCTTTGATGAAATTATGAAA
CAAAAATCTTCAGATTCTTCTCAGTCTAAACCAACTCAAAGTGAACAACCTATAACAAAA
AGCATTCCTGAAAAGAAGAAAATTACGAATTTATTTGATGATGAAGATGAAGATGATGCT
TTTGATGATATTTTTAATAAGAAATCTGTGAACTTTTCAACACCAAAAGAGAGTGAAAAG
AAATTGAATGTAGAAATGCCAAAAGAAATTCAAAAGAAAGAAGATGTGCAAAAATTTATT
TATGATGAAGATAAATTGTTATTTGATGAGCAGAAAAGTAAAAATTTGATAAAAGAAAAG
CAGGAAATTTCAAAAACACTTTTTAACGATCATAAAAGTGAAATTTTATCTAAAAAAAAA
AATAAAATTCCAAAGTCATTGTTTGACGATGAAGAAAGTGACGATGTTTCAAGTCTTTTG
ACTAAAAAGAAAGATGAAACTCCAAAATTAACTTCTAAAGATAGTGAAATAACATCAAAT
CTAATATCTAAAGAAAAGAATGAACAACCACAATCAATTTTTGAAACTCAAACCTCAACA
AAATTGTTAAATGATGAAAGAAGAAAAATTCCATCAAATTTATTGAATGATGAGAAAAAA
GAAAGATTATCATCATTGTTTGATGATGAAGATAGTGAAGTTCTATCAAGTTCTTTGACT
AAAAATAAGGCTGAACATTCAAAATTATTCTTTGACGATCATAAAAGTAAAATTTCACCT
AGTTTAGCTAGAGAAAAGCAAGAAATTCCCGAAACAAATTCAAAAGATCATGAAAATGAA
ACATCGTCAAATATTCCAACTAAAGAAAAGCCGGTGCAGTCTAATCCAATTTCTAAAGAT
GAAACAACAATAAACTTATTTGATGATCAAACAGCAAAAAAATCTTCAAATTTATTAACT
AATGAGAAAGAAGAAAATCCAAAAATAATTCCTGAAACTCCACAACAATCAAAATTGTCT
AGTGAATCAATTCAAAAAAAAAAACAAACAAATTCAGAAGATTTCGAAACATCATCAAAT
CTAATTACTGAAGCAAACAATTTAAAGGACTCGAAACAATCTAAAATTAGTGATAATAAA
AATGATTTTACAAGTGAGGAAGGTTATCAACCTCATACTCATCTTCCAATAAATGATAAG
AATACAAGTCAATTAGCCAAGACAACTGAAAATAGCAAGAAAAAAATAAACTTGTTTGAC
GATGATGACGACAATGACGAAGATTTCTTTGTAAATAAAAGTACGAAAATCACGTCAGAG
GCTAATAAAATTGAAAGTGAATCATCAAAAGTTGAAAACAAAGCTATAAATAATGATGGA
ATTTCTAATTCAAAGATAAACGAACAAATAAAAACTAGTGAAAGATCAAATAATGAGATT
ATGAGTGAGACAGAAAAAGTTCATGACAAAGTGCCAAATACGAATATTAAAAATACGAAA
GAAAATAAAAATGCGCCATTCGATGACTTTAATAGATCAATTCCCTTTTTAAATGATGAA
CCGCCTGATGACGAAGATACATGGGATCCTGAAGAAAATAATAATTTTGAAGAACCAGAA
TCGAAAGCATTTAGAAAAAATTTCAATCAAAGCAAATCAAGCTATCAAATGCCACTATTT
GATGACATTCCACCTGATGATGAAGAATTTTCAACCTCAAATGCACCACCAATTCCAAGT
TTTGATGAATTTGATGATGATGATGATGAGAGTACTTTAAGAGAAAATGAAGATCTGCCA
ATAATTGCTGAACATAAAATAAATGAAATAGTAGAAGAAAAAGATCTATTTACTGAATCA
ATTAGAAAAACATTAGAAAAGAGCGATTTTAATGATCAATGGTCAGATTTTAAAGAAAAA
ATTAAATCAAAGACTGAAATTGAAGCTCAAAAAGTTGAAAAATCCCCTAAGAAAATTAAA
ATAGAAAGAAATTCTCAAGATACAGTCTCTCTAAATTCATCTCAAGAAAGTAAAATTTCA
CCTGAAAAGAATGATTCTGATAAATCAATAAATACAGGAAATACAAGCAATATTAAAAGT
AAATTAGATTCATTCATAAAATCTCAAGAACAGCCAAATGTTAGTCAAAATGAACCGAAA
AAACTTCCTGGAAAACTCAATAGCAGTTTAAAAATAAATGTTAGTGCATTAATGCCTGGT
GCAAGATTACCAAAGAAAGAGGAAAGTCCTACAAAAATTATAGATATGAATGAAGATGAA
AAAATTTTAATTCAATCAAATACTTCTTCAGAATCAAATTCTACTCCATCGACAAAAAAT
GAGAACAATACTAACCTACTCAATAACGAAGCAACAAAGTTACGAGCGAAAATTCAAGTC
AAGCGACGACCATCAACTCGAAAAGGTCGTCGGTCAATATATGAGAAAACACTTAATGAA
CATTTAGACGAGAATGAAGAAGAAAAACAAGATGATAATGACATAATAGACGAATTGGCG
ACAGCAAATGAGGCTAAGGTCGTTGAACCAATTTCATCGAATCTCTCAATGAATGATAAC
GATAAAACCCATAATAAAATGACAATTCATGAAGAATTGAGTAATACTAAAGCAAACATG
AGTAATTTCTTCAATGAAGAACCACCACCAATTGAAATAAACTCAAATGCTCAAAATATT
GTGAGGAATAAAATTCCTGTATTCTATGATGATGAAGATGAGACAAAAAAGATGCTTGAA
GAGCAGAAACTAAAAGCTGAAAGTGAGAAAAAATCTGCTGCTGCTGCACTTTTTGATGAT
GTTGAAGATGATATTTTTGGTGAAAAGTCAAATATTGTAAAAGAAGTTGAATCACAACCA
AAAGTAAGTTCACAATTGAAAAAGACTTCAAAACCTCTATTTGGTGATGATGAAAGTGAT
GAAGAAATTTTTAAACCTGCATCAACTCCAAAACAAATTCAACAATCAAAACCAGCTATG
AAAGACACTCAACAATCAAAGAAAATTGCTCAAAAGTCTCTTTTTGATGATGAAGAAGAC
GATGATGATTTGTTTGGAACGCCAAAAAAGAAGGATATTGAGCAGAAATCTGAAAAATTA
TTTGATAGCAAAGAGAAGCAAAAACAAGGCTCAATAATTTTTGCTACCTCAAAATCTTCC
AAGCAACAACAATCATTATTTGGTGACAGTGATGAAGAAGATGACGATGATTTGTTTAGC
TCTAAACCAAAAAATATTCTAAGTAAATCATCAAGTGCAATGAAATCATCAACATCAAAT
GTAGCATCAACATCGACAGTAAAGAAAACATTAAGTGCAGTAAATGATCCACTTAAGGAT
TTATTAGATAAATAG
>g12619.t1 Gene=g12619 Length=1564
MNHQDLIETASKDEWTLECDKKMLDMMQNIASKIENRATNTKNKMNAMILNLDETKVKMS
NLTRINDVKNSVFCENLITDDHLEPINEVPKTNAVKLLSTQIPIENGLKLMDNCFEKHRV
NFNPSESRSETSIVYRPVDKFYSSLPYLIGSDKWKEKWHLGLIEEDKVSQTGSTYAESSG
SNATQNIENNLATASSLMASNDSLAKSSSSIGDQMVINKPTGLFDELYDESKETATISQP
TSSFFRPQPAERKIVNLFDDEPPELDDSSYNARKPVNLFEDDYQSVASLPMNEDKVDNSQ
FQPPPPVDIFNENEFDDFIKRMENRNQQPSEIVDDVKEKVTAVNSGGVQRDMKLIADEIK
KVQLKKKSEDVDVSENEQTKVIKPKVHEQMIAQSVKVLPEVKKVEPKEMKNTTPQPFMPV
TQQKSSSQPQQQSIPKSRPKIANLFDDDEDDEDFFDEIMKQKSSDSSQSKPTQSEQPITK
SIPEKKKITNLFDDEDEDDAFDDIFNKKSVNFSTPKESEKKLNVEMPKEIQKKEDVQKFI
YDEDKLLFDEQKSKNLIKEKQEISKTLFNDHKSEILSKKKNKIPKSLFDDEESDDVSSLL
TKKKDETPKLTSKDSEITSNLISKEKNEQPQSIFETQTSTKLLNDERRKIPSNLLNDEKK
ERLSSLFDDEDSEVLSSSLTKNKAEHSKLFFDDHKSKISPSLAREKQEIPETNSKDHENE
TSSNIPTKEKPVQSNPISKDETTINLFDDQTAKKSSNLLTNEKEENPKIIPETPQQSKLS
SESIQKKKQTNSEDFETSSNLITEANNLKDSKQSKISDNKNDFTSEEGYQPHTHLPINDK
NTSQLAKTTENSKKKINLFDDDDDNDEDFFVNKSTKITSEANKIESESSKVENKAINNDG
ISNSKINEQIKTSERSNNEIMSETEKVHDKVPNTNIKNTKENKNAPFDDFNRSIPFLNDE
PPDDEDTWDPEENNNFEEPESKAFRKNFNQSKSSYQMPLFDDIPPDDEEFSTSNAPPIPS
FDEFDDDDDESTLRENEDLPIIAEHKINEIVEEKDLFTESIRKTLEKSDFNDQWSDFKEK
IKSKTEIEAQKVEKSPKKIKIERNSQDTVSLNSSQESKISPEKNDSDKSINTGNTSNIKS
KLDSFIKSQEQPNVSQNEPKKLPGKLNSSLKINVSALMPGARLPKKEESPTKIIDMNEDE
KILIQSNTSSESNSTPSTKNENNTNLLNNEATKLRAKIQVKRRPSTRKGRRSIYEKTLNE
HLDENEEEKQDDNDIIDELATANEAKVVEPISSNLSMNDNDKTHNKMTIHEELSNTKANM
SNFFNEEPPPIEINSNAQNIVRNKIPVFYDDEDETKKMLEEQKLKAESEKKSAAAALFDD
VEDDIFGEKSNIVKEVESQPKVSSQLKKTSKPLFGDDESDEEIFKPASTPKQIQQSKPAM
KDTQQSKKIAQKSLFDDEEDDDDLFGTPKKKDIEQKSEKLFDSKEKQKQGSIIFATSKSS
KQQQSLFGDSDEEDDDDLFSSKPKNILSKSSSAMKSSTSNVASTSTVKKTLSAVNDPLKD
LLDK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 34 | g12619.t1 | Coils | Coil | Coil | 1251 | 1271 | - |
| 35 | g12619.t1 | Coils | Coil | Coil | 1349 | 1376 | - |
| 19 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 494 | - |
| 23 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 438 | - |
| 14 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 479 | - |
| 15 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 851 | - |
| 26 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 612 | - |
| 10 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 640 | - |
| 31 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 669 | - |
| 5 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 684 | - |
| 7 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 724 | - |
| 32 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 757 | - |
| 13 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 770 | 786 | - |
| 22 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 794 | 810 | - |
| 18 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 811 | 827 | - |
| 8 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 835 | 851 | - |
| 6 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 882 | 990 | - |
| 17 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 917 | - |
| 21 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 947 | - |
| 9 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 974 | - |
| 24 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1003 | 1038 | - |
| 4 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1087 | 1272 | - |
| 16 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1087 | 1104 | - |
| 12 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1119 | - |
| 27 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1126 | 1174 | - |
| 33 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1185 | 1199 | - |
| 30 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1201 | 1232 | - |
| 3 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1250 | 1264 | - |
| 25 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1392 | 1549 | - |
| 2 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1396 | 1410 | - |
| 1 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1411 | 1425 | - |
| 28 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1428 | 1450 | - |
| 11 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1464 | 1486 | - |
| 20 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1489 | 1506 | - |
| 29 | g12619.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1523 | 1549 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K18462 (WASH complex subunit FAM21)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
