General information for g12619.t34
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12619 is located on chr_1: 24815549..24817535 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12619 | g12619.t34 | TTS | g12619.t34 | 24814960 | 24814960 |
| chr_1 | g12619 | g12619.t34 | isoform | g12619.t34 | 24815549 | 24817535 |
| chr_1 | g12619 | g12619.t34 | exon | g12619.t34.exon1 | 24815549 | 24817030 |
| chr_1 | g12619 | g12619.t34 | cds | g12619.t34.CDS1 | 24815549 | 24817030 |
| chr_1 | g12619 | g12619.t34 | exon | g12619.t34.exon2 | 24817095 | 24817280 |
| chr_1 | g12619 | g12619.t34 | cds | g12619.t34.CDS2 | 24817095 | 24817280 |
| chr_1 | g12619 | g12619.t34 | exon | g12619.t34.exon3 | 24817370 | 24817462 |
| chr_1 | g12619 | g12619.t34 | cds | g12619.t34.CDS3 | 24817370 | 24817462 |
| chr_1 | g12619 | g12619.t34 | exon | g12619.t34.exon4 | 24817533 | 24817535 |
| chr_1 | g12619 | g12619.t34 | cds | g12619.t34.CDS4 | 24817533 | 24817535 |
| chr_1 | g12619 | g12619.t34 | TSS | g12619.t34 | 24817550 | 24817550 |
Sequences
>g12619.t34 Gene=g12619 Length=1764
ATGAATCATCAGGATTTAATAGAAACAGCGTCCAAGGATGAGTGGACGTTGGAGTGTGAT
AAAAAAATGCTCGATATGATGCAAAATATTGCATCGAAAATAGAAAATCGTGCAACAAAC
ACAAAAAATAAAATGAATGCAATGATTCTCAATTTGGATGAGACGAAAGTAAAAATGAGT
AATTTAACACGCATAAATGATGTTAAAAATTCAGTCTTTTGTGAAAATTTAATTACGGAT
GATCATTTAGAACCAATAAATGAAGTGCCTAAAACAAATGCAGTCAAACTGTTATCAACA
CAAATACCCATTGAAAATGGATTAAAACTTATGGATAATTGTTTTGAGAAACATCGAGTG
AATTTTAACCCAAGTGAAAGTCGAAGTGAAACATCAATAGTTTATAGACCAGTCGATAAA
TTTTATAGTTCACTGCCCTATTTAATCGGATCAGATAAATGGAAAGAAAAATGGCATTTA
GGATTAATTGAAGAGGACAAAGTGTCACAAACTGGATCAACTTATGCCGAATCAAGCGGA
TCAAATGCAACTCAAAATATTGAAAATAATTTAGCAACTGCATCAAGTTTAATGGCATCA
AATGATAGTTTAGCAAAATCATCAAGTTCAATTGGTGACCAAATGGTGATAAATAAGCCA
ACTGGTCTTTTTGATGAACTCTATGATGAATCTAAAGAAACTGCTACAATTTCACAACCA
ACTTCTTCATTCTTTAGACCACAACCAGCTGAAAGAAAAATTGTGAATTTATTTGATGAT
GAACCACCTGAACTTGATGATTCTTCATATAATGCAAGAAAACCAGTAAATTTATTTGAA
GATGATTATCAATCAGTTGCATCACTGCCAATGAATGAAGATAAAGTCGATAATTCACAA
TTTCAACCTCCACCACCTGTTGATATTTTCAATGAAAATGAATTTGATGATTTTATAAAG
AGAATGGAAAATAGAAACCAACAGCCAAGTGAAATTGTTGATGATGTTAAAGAAAAAGTT
ACTGCTGTGAATAGTGGTGGTGTGCAGCGTGATATGAAATTGATTGCTGATGAAATTAAA
AAAGTGCAATTAAAGAAAAAAAGTGAAGATGTTGATGTTAGTGAAAATGAGCAGACTAAA
GTGATTAAACCAAAAGTCCATGAACAAATGATTGCTCAATCTGTAAAAGTTTTACCTGAA
GTTAAAAAAGTTGAACCTAAAGAAATGAAAAATACTACTCCACAACCTTTTATGCCTGTG
ACTCAACAAAAGTCTTCTTCTCAACCACAACAACAATCTATTCCTAAATCACGGCCTAAA
ATTGCAAATCTTTTTGATGACGACGAAGATGATGAAGATTTCTTTGATGAAATTATGAAA
CAAAAATCTTCAGATTCTTCTCAGTCTAAACCAACTCAAAGTGAACAACCTATAACAAAA
AGCATTCCTGAAAAGAAGAAAATTACGAATTTATTTGATGATGAAGATGAAGATGATGCT
TTTGATGATATTTTTAATAAGAAATCTGTGAACTTTTCAACACCAAAAGAGAGTGAAAAG
AAATTGAATGTAGAAATGCCAAAAGAAATTCAAAAGAAAGAAGATGTGCAAAAATTTATT
TATGATGAAGATAAATTGTTATTTGATGAGCAGAAAAGTAAAAATTTGATAAAAGAAAAG
CAGGAAATTTCAAAAACACTTTTTAACGATCATAAAAGTGAAATTTTATCTAAAAAAAAA
AATAAAATTCCAAAGTCATTGTTT
>g12619.t34 Gene=g12619 Length=588
MNHQDLIETASKDEWTLECDKKMLDMMQNIASKIENRATNTKNKMNAMILNLDETKVKMS
NLTRINDVKNSVFCENLITDDHLEPINEVPKTNAVKLLSTQIPIENGLKLMDNCFEKHRV
NFNPSESRSETSIVYRPVDKFYSSLPYLIGSDKWKEKWHLGLIEEDKVSQTGSTYAESSG
SNATQNIENNLATASSLMASNDSLAKSSSSIGDQMVINKPTGLFDELYDESKETATISQP
TSSFFRPQPAERKIVNLFDDEPPELDDSSYNARKPVNLFEDDYQSVASLPMNEDKVDNSQ
FQPPPPVDIFNENEFDDFIKRMENRNQQPSEIVDDVKEKVTAVNSGGVQRDMKLIADEIK
KVQLKKKSEDVDVSENEQTKVIKPKVHEQMIAQSVKVLPEVKKVEPKEMKNTTPQPFMPV
TQQKSSSQPQQQSIPKSRPKIANLFDDDEDDEDFFDEIMKQKSSDSSQSKPTQSEQPITK
SIPEKKKITNLFDDEDEDDAFDDIFNKKSVNFSTPKESEKKLNVEMPKEIQKKEDVQKFI
YDEDKLLFDEQKSKNLIKEKQEISKTLFNDHKSEILSKKKNKIPKSLF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g12619.t34 | MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 494 | - |
| 1 | g12619.t34 | MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 438 | - |
| 2 | g12619.t34 | MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 479 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed