General information for g12619.t35
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12619 is located on chr_1: 24815549..24817535 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12619 | g12619.t35 | TTS | g12619.t35 | 24814960 | 24814960 |
| chr_1 | g12619 | g12619.t35 | isoform | g12619.t35 | 24815549 | 24817535 |
| chr_1 | g12619 | g12619.t35 | exon | g12619.t35.exon1 | 24815549 | 24817280 |
| chr_1 | g12619 | g12619.t35 | cds | g12619.t35.CDS1 | 24815549 | 24816982 |
| chr_1 | g12619 | g12619.t35 | exon | g12619.t35.exon2 | 24817370 | 24817462 |
| chr_1 | g12619 | g12619.t35 | exon | g12619.t35.exon3 | 24817533 | 24817535 |
| chr_1 | g12619 | g12619.t35 | TSS | g12619.t35 | 24817550 | 24817550 |
Sequences
>g12619.t35 Gene=g12619 Length=1828
ATGAATCATCAGGATTTAATAGAAACAGCGTCCAAGGATGAGTGGACGTTGGAGTGTGAT
AAAAAAATGCTCGATATGATGCAAAATATTGCATCGAAAATAGAAAATCGTGCAACAAAC
ACAAAAAATAAAATGAATGCAATGATTCTCAATTTGGATGAGACGAAAGTAAAAATGAGT
AATTTAACACGCATAAATGATGTTAAAAATTCAGTCTTTTGTGAAAATTTAATTACGGAT
GATCATTTAGAACCAATAAATGAAGTGCCTAAAACAAATGCAGTAAGTGCATTGACATTA
CAAAATAATTCCAAATCAATAAAAATTTTGTTGCGCAATCTTTTAGGTCAAACTGTTATC
AACACAAATACCCATTGAAAATGGATTAAAACTTATGGATAATTGTTTTGAGAAACATCG
AGTGAATTTTAACCCAAGTGAAAGTCGAAGTGAAACATCAATAGTTTATAGACCAGTCGA
TAAATTTTATAGTTCACTGCCCTATTTAATCGGATCAGATAAATGGAAAGAAAAATGGCA
TTTAGGATTAATTGAAGAGGACAAAGTGTCACAAACTGGATCAACTTATGCCGAATCAAG
CGGATCAAATGCAACTCAAAATATTGAAAATAATTTAGCAACTGCATCAAGTTTAATGGC
ATCAAATGATAGTTTAGCAAAATCATCAAGTTCAATTGGTGACCAAATGGTGATAAATAA
GCCAACTGGTCTTTTTGATGAACTCTATGATGAATCTAAAGAAACTGCTACAATTTCACA
ACCAACTTCTTCATTCTTTAGACCACAACCAGCTGAAAGAAAAATTGTGAATTTATTTGA
TGATGAACCACCTGAACTTGATGATTCTTCATATAATGCAAGAAAACCAGTAAATTTATT
TGAAGATGATTATCAATCAGTTGCATCACTGCCAATGAATGAAGATAAAGTCGATAATTC
ACAATTTCAACCTCCACCACCTGTTGATATTTTCAATGAAAATGAATTTGATGATTTTAT
AAAGAGAATGGAAAATAGAAACCAACAGCCAAGTGAAATTGTTGATGATGTTAAAGAAAA
AGTTACTGCTGTGAATAGTGGTGGTGTGCAGCGTGATATGAAATTGATTGCTGATGAAAT
TAAAAAAGTGCAATTAAAGAAAAAAAGTGAAGATGTTGATGTTAGTGAAAATGAGCAGAC
TAAAGTGATTAAACCAAAAGTCCATGAACAAATGATTGCTCAATCTGTAAAAGTTTTACC
TGAAGTTAAAAAAGTTGAACCTAAAGAAATGAAAAATACTACTCCACAACCTTTTATGCC
TGTGACTCAACAAAAGTCTTCTTCTCAACCACAACAACAATCTATTCCTAAATCACGGCC
TAAAATTGCAAATCTTTTTGATGACGACGAAGATGATGAAGATTTCTTTGATGAAATTAT
GAAACAAAAATCTTCAGATTCTTCTCAGTCTAAACCAACTCAAAGTGAACAACCTATAAC
AAAAAGCATTCCTGAAAAGAAGAAAATTACGAATTTATTTGATGATGAAGATGAAGATGA
TGCTTTTGATGATATTTTTAATAAGAAATCTGTGAACTTTTCAACACCAAAAGAGAGTGA
AAAGAAATTGAATGTAGAAATGCCAAAAGAAATTCAAAAGAAAGAAGATGTGCAAAAATT
TATTTATGATGAAGATAAATTGTTATTTGATGAGCAGAAAAGTAAAAATTTGATAAAAGA
AAAGCAGGAAATTTCAAAAACACTTTTTAACGATCATAAAAGTGAAATTTTATCTAAAAA
AAAAAATAAAATTCCAAAGTCATTGTTT
>g12619.t35 Gene=g12619 Length=478
MDNCFEKHRVNFNPSESRSETSIVYRPVDKFYSSLPYLIGSDKWKEKWHLGLIEEDKVSQ
TGSTYAESSGSNATQNIENNLATASSLMASNDSLAKSSSSIGDQMVINKPTGLFDELYDE
SKETATISQPTSSFFRPQPAERKIVNLFDDEPPELDDSSYNARKPVNLFEDDYQSVASLP
MNEDKVDNSQFQPPPPVDIFNENEFDDFIKRMENRNQQPSEIVDDVKEKVTAVNSGGVQR
DMKLIADEIKKVQLKKKSEDVDVSENEQTKVIKPKVHEQMIAQSVKVLPEVKKVEPKEMK
NTTPQPFMPVTQQKSSSQPQQQSIPKSRPKIANLFDDDEDDEDFFDEIMKQKSSDSSQSK
PTQSEQPITKSIPEKKKITNLFDDEDEDDAFDDIFNKKSVNFSTPKESEKKLNVEMPKEI
QKKEDVQKFIYDEDKLLFDEQKSKNLIKEKQEISKTLFNDHKSEILSKKKNKIPKSLF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g12619.t35 | MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 384 | - |
| 1 | g12619.t35 | MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 328 | - |
| 2 | g12619.t35 | MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 369 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
