General information for g12621.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Facilitated trehalose transporter Tret1.
Parent gene
- The parent gene g12621 is located on chr_1: 24822183..24824129 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12621 | g12621.t1 | TSS | g12621.t1 | 24819506 | 24819506 |
| chr_1 | g12621 | g12621.t1 | isoform | g12621.t1 | 24819843 | 24822183 |
| chr_1 | g12621 | g12621.t1 | exon | g12621.t1.exon1 | 24819843 | 24819873 |
| chr_1 | g12621 | g12621.t1 | cds | g12621.t1.CDS1 | 24819843 | 24819873 |
| chr_1 | g12621 | g12621.t1 | exon | g12621.t1.exon2 | 24819933 | 24820201 |
| chr_1 | g12621 | g12621.t1 | cds | g12621.t1.CDS2 | 24819933 | 24820201 |
| chr_1 | g12621 | g12621.t1 | exon | g12621.t1.exon3 | 24821116 | 24821868 |
| chr_1 | g12621 | g12621.t1 | cds | g12621.t1.CDS3 | 24821116 | 24821868 |
| chr_1 | g12621 | g12621.t1 | exon | g12621.t1.exon4 | 24821926 | 24822183 |
| chr_1 | g12621 | g12621.t1 | cds | g12621.t1.CDS4 | 24821926 | 24822183 |
| chr_1 | g12621 | g12621.t1 | TTS | g12621.t1 | 24822639 | 24822639 |
Sequences
>g12621.t1 Gene=g12621 Length=1311
ATGTGGAGTGAAGTTCTACTTGCGATTTTCGCAAATGTTGGGTCATTTTATTTTGGTGTC
ACAATTGCTTGGTCATCGCCAGCTGGTCCACAAGTTATTGAGAATGAAAATTATCCATTT
TGGGTGACAAAAAATCAATTTGGACTTATTGTTGCTTGCATTTCACTTGGCGGTATTACT
TCATGTATTCCATCGGGAATTATTAGGCATAAAATTGGAACAAAAAAGACAATTTTTTAT
TTTTCATTTCCTGGTGTGATTGGATCAATTTTAATTACATTGGCAGATAATTTAGCTATG
CTACTAATAGGCAGATACTTAATTGGAATTTCACTCGGTTGTTTTATGTTTCTTGTGCAA
ATTTACGTAGGTGAAATCAGTAGCGATAAGAATCGTGGAAGTTTGTTGAACTTTATTCAC
ATTCTGGTGCATTTAGGTGTACTTTTTGTCTATGTACTTGGACAAATTGTGAGTTTGAAA
ATGTTAAATATTATTTGTGGTGCTATTCCATTATTTTATGGTATTGGATTTTTACTTATG
CCAGAAACAAAGCCATATTTGATAAGTAAAGGAAAATACCAAAATGACATCAATGCAAAT
ACAGCAGAACTCAGTAAATTGAAGCAGAATAATGATAAACCTGAAGTGAAAAAGAAAACA
ATTGTAGAATTGCTCCAAATGAGAGCGACGAGAAGAGCAATGATCATAATGGTTTTTCAG
TTCTTTTTCTTTCAAATGTCTGGCGCTGTTGCTGTCAATTTCTATGCAAAATTAATATTT
ATTGAAGCAAGTGTGAACATCAATCCAGGTTTAGCTTCAATCATCAATGTTTGTGTACTC
TGTTTGAGTGCCACAGTGTCTGTATTTTATGTACGAAAATTTGGACGCCGTATGATGCTT
TTTACATTCAATTCATTGAGTGTTGTGAGTTTGATTGGTCTTGGCATTTTTTTCTCACTA
AAAGACATGGGATATTCTATTGATAATATTAAATGGCTGCCGCTGGTGTCACTTTGTTTG
AATTCTATTGCATTCTGTTTGGGAATCGCTCCAGTAACTTATGGACTTCTTGGTGAACTT
TTTACAATTGAAGCTAAGAAAATTCTTGCACCAATGGCACAAATTTTTAATCAGATAATG
ACATTTACTATTGGAATTTCTTTTCCATTTTTATCATCTGTGATTGGCACTGGTAGTGTA
TTCTTAATTTTTGCAATAACAACTTTTATTGATATTATATTTGGCTACTATTTTATTCCT
GAAACCAAAGGAAAATCTTTTGATGAGATTCAAGAAGCTTTATCAAAATAA
>g12621.t1 Gene=g12621 Length=436
MWSEVLLAIFANVGSFYFGVTIAWSSPAGPQVIENENYPFWVTKNQFGLIVACISLGGIT
SCIPSGIIRHKIGTKKTIFYFSFPGVIGSILITLADNLAMLLIGRYLIGISLGCFMFLVQ
IYVGEISSDKNRGSLLNFIHILVHLGVLFVYVLGQIVSLKMLNIICGAIPLFYGIGFLLM
PETKPYLISKGKYQNDINANTAELSKLKQNNDKPEVKKKTIVELLQMRATRRAMIIMVFQ
FFFFQMSGAVAVNFYAKLIFIEASVNINPGLASIINVCVLCLSATVSVFYVRKFGRRMML
FTFNSLSVVSLIGLGIFFSLKDMGYSIDNIKWLPLVSLCLNSIAFCLGIAPVTYGLLGEL
FTIEAKKILAPMAQIFNQIMTFTIGISFPFLSSVIGTGSVFLIFAITTFIDIIFGYYFIP
ETKGKSFDEIQEALSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g12621.t1 | Coils | Coil | Coil | 190 | 210 | - |
| 5 | g12621.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 1 | 436 | 2.0E-81 |
| 2 | g12621.t1 | PANTHER | PTHR48021:SF63 | GH07001P-RELATED | 9 | 433 | 3.7E-96 |
| 3 | g12621.t1 | PANTHER | PTHR48021 | - | 9 | 433 | 3.7E-96 |
| 1 | g12621.t1 | Pfam | PF00083 | Sugar (and other) transporter | 8 | 433 | 6.4E-53 |
| 9 | g12621.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 4 | - |
| 28 | g12621.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 26 | - |
| 14 | g12621.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 27 | 45 | - |
| 31 | g12621.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 46 | 66 | - |
| 12 | g12621.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 67 | 77 | - |
| 27 | g12621.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 78 | 95 | - |
| 15 | g12621.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 96 | 100 | - |
| 26 | g12621.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 101 | 123 | - |
| 8 | g12621.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 124 | 134 | - |
| 22 | g12621.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 135 | 156 | - |
| 17 | g12621.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 157 | 161 | - |
| 21 | g12621.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 162 | 180 | - |
| 10 | g12621.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 181 | 232 | - |
| 29 | g12621.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 233 | 256 | - |
| 19 | g12621.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 257 | 270 | - |
| 24 | g12621.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 271 | 291 | - |
| 13 | g12621.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 292 | 297 | - |
| 20 | g12621.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 298 | 320 | - |
| 18 | g12621.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 321 | 331 | - |
| 25 | g12621.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 332 | 357 | - |
| 11 | g12621.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 358 | 368 | - |
| 23 | g12621.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 369 | 388 | - |
| 16 | g12621.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 389 | 393 | - |
| 30 | g12621.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 394 | 419 | - |
| 7 | g12621.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 420 | 436 | - |
| 44 | g12621.t1 | ProSitePatterns | PS00217 | Sugar transport proteins signature 2. | 107 | 132 | - |
| 45 | g12621.t1 | ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 7 | 423 | 25.117 |
| 4 | g12621.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 7 | 432 | 3.27E-44 |
| 42 | g12621.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 27 | - |
| 40 | g12621.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 47 | 69 | - |
| 36 | g12621.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 78 | 95 | - |
| 35 | g12621.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 101 | 123 | - |
| 43 | g12621.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 135 | 157 | - |
| 37 | g12621.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 161 | 180 | - |
| 39 | g12621.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 235 | 254 | - |
| 33 | g12621.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 269 | 291 | - |
| 32 | g12621.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 298 | 320 | - |
| 38 | g12621.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 335 | 357 | - |
| 41 | g12621.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 369 | 391 | - |
| 34 | g12621.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 395 | 417 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
