Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12621 g12621.t2 TSS g12621.t2 24819506 24819506
chr_1 g12621 g12621.t2 isoform g12621.t2 24819843 24820573
chr_1 g12621 g12621.t2 exon g12621.t2.exon1 24819843 24819873
chr_1 g12621 g12621.t2 cds g12621.t2.CDS1 24819843 24819873
chr_1 g12621 g12621.t2 exon g12621.t2.exon2 24819933 24820573
chr_1 g12621 g12621.t2 cds g12621.t2.CDS2 24819933 24820249
chr_1 g12621 g12621.t2 TTS g12621.t2 NA NA

Sequences

>g12621.t2 Gene=g12621 Length=672
ATGTGGAGTGAAGTTCTACTTGCGATTTTCGCAAATGTTGGGTCATTTTATTTTGGTGTC
ACAATTGCTTGGTCATCGCCAGCTGGTCCACAAGTTATTGAGAATGAAAATTATCCATTT
TGGGTGACAAAAAATCAATTTGGACTTATTGTTGCTTGCATTTCACTTGGCGGTATTACT
TCATGTATTCCATCGGGAATTATTAGGCATAAAATTGGAACAAAAAAGACAATTTTTTAT
TTTTCATTTCCTGGTGTGATTGGATCAATTTTAATTACATTGGCAGATAATTTAGCTATG
GTGAGTGATTTTTATTTTGAAAATATTTCAAGGTTGAGACACTTTTAAACTAAATAATTT
AAATTTTTTAATTGAAATCAATCAAAATTAGTGATTTCATTTAATATTTCAACTCAAAGT
CAATCATAATAAAATATGAATATAAAATTTTCAAGACAAAATGTAGGCTACATAAGTTAA
ATATAGGAAGATTATTTCATTAAACCGTAACTTAATAGTGATAACGTAATCATAAAAGCA
TTATAAATTTTTTAGTGCTTGTCATTGTTATTAGGACATGTGATTGCTTGTTAAGAAAAA
ATAATCTATTTTTATCTCCTAAAAAAATGTTCAAAGCTTAAGATTAATAAAAGCGAAAGA
TTTCTATAAATC

>g12621.t2 Gene=g12621 Length=115
MWSEVLLAIFANVGSFYFGVTIAWSSPAGPQVIENENYPFWVTKNQFGLIVACISLGGIT
SCIPSGIIRHKIGTKKTIFYFSFPGVIGSILITLADNLAMVSDFYFENISRLRHF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g12621.t2 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 3 104 2.7E-12
2 g12621.t2 PANTHER PTHR48021:SF63 GH07001P-RELATED 8 101 1.5E-17
3 g12621.t2 PANTHER PTHR48021 - 8 101 1.5E-17
1 g12621.t2 Pfam PF00083 Sugar (and other) transporter 8 100 7.5E-6
10 g12621.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 4 -
14 g12621.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 5 26 -
13 g12621.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 27 45 -
15 g12621.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 46 66 -
11 g12621.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 67 77 -
16 g12621.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 78 95 -
12 g12621.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 96 115 -
9 g12621.t2 ProSiteProfiles PS50850 Major facilitator superfamily (MFS) profile. 7 115 10.038
7 g12621.t2 SUPERFAMILY SSF103473 MFS general substrate transporter 7 101 5.75E-9
6 g12621.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 27 -
4 g12621.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 47 69 -
5 g12621.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 78 100 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0016021 integral component of membrane CC
GO:0022857 transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed