Gene loci information

Transcript annotation

  • This transcript has been annotated as histone-arginine N-methyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1263 g1263.t1 isoform g1263.t1 9174259 9175704
chr_3 g1263 g1263.t1 exon g1263.t1.exon1 9174259 9174354
chr_3 g1263 g1263.t1 cds g1263.t1.CDS1 9174259 9174354
chr_3 g1263 g1263.t1 exon g1263.t1.exon2 9174408 9175225
chr_3 g1263 g1263.t1 cds g1263.t1.CDS2 9174408 9175225
chr_3 g1263 g1263.t1 exon g1263.t1.exon3 9175617 9175704
chr_3 g1263 g1263.t1 cds g1263.t1.CDS3 9175617 9175704
chr_3 g1263 g1263.t1 TSS g1263.t1 NA NA
chr_3 g1263 g1263.t1 TTS g1263.t1 NA NA

Sequences

>g1263.t1 Gene=g1263 Length=1002
ATGGAACAAAATTCAAAATTGGGAAGTATAATTAAATTTAGAAGTAGAAACGAATTTAAT
TTTGGTATAATACATGAAATTCTAAAAGACCGTATGAAAATTATAACAATCGACAAAGAC
CCAAAGTATAAAATATTAAAAAACAGTTCAATTGAATTTATTGGAGACAATGTTACTTTT
ATAGATGAACTGCACAAATTATATTATGATTTGCCTAAAAATGAACGATTAAAATTGATA
CATTTTCAAAAAAATTTGCTGCCACATGACATTACCGTAGAAAGTTATATTGGACGAACT
ATATTGCAAAAGAAAATCTTACTGATCCTAAAAAATAATAATAAAGAAATATCTCTTGAT
ATTGATGAAAACGATTTGAATTTTGAGAAAATTGAAAAAAATATTATGGTGTCAAATGTG
ACTTTTAAGAAAAATCAAAATTCATTAATTGAGTGCGATTGCACGCCGTATGATGATGAA
CCTTGTGGTCCGAATTCTTATTGCATCAATAGAAATGATGGTTTCGAATGCAGCAAAAAT
TGTGCTGCAGGTCAAAAATGTCAAAATAAAAAATTATCAAATAATGAAACGCCTCAACTA
GGTTTATTTGATACAAAGACTCGTGGGATCGGTGTAAAAGCGCTTGAAGAAATTCAAAAA
GATAACTTTATTATCGAGTATATTGGAGAAATCATTGATGAAAAAGAAAAAAATGAAAGA
TTAAAGAAATTTCCAAAAGTTTCTTATATTTATACACTCACGAAAAGTGTTTTTATTGAT
GCACATTTTAAAAGCAACTTTTCTCGTTTTGTTAATCATAGCTGTGAACCCAATGCATAT
ACACGAATAATTTTCGTTAATGGCTTTCCCAGATTGGGCATCTATGCATTAAGGACGATT
AAAAAGAATGAGGAAGTACTCATCGACTACGGCTGGGGAGAAGGTAATGAACTAGGAATT
GTTTGTTTATGCGGCAGTAGTAAATGTAGGAAAAATATATGA

>g1263.t1 Gene=g1263 Length=333
MEQNSKLGSIIKFRSRNEFNFGIIHEILKDRMKIITIDKDPKYKILKNSSIEFIGDNVTF
IDELHKLYYDLPKNERLKLIHFQKNLLPHDITVESYIGRTILQKKILLILKNNNKEISLD
IDENDLNFEKIEKNIMVSNVTFKKNQNSLIECDCTPYDDEPCGPNSYCINRNDGFECSKN
CAAGQKCQNKKLSNNETPQLGLFDTKTRGIGVKALEEIQKDNFIIEYIGEIIDEKEKNER
LKKFPKVSYIYTLTKSVFIDAHFKSNFSRFVNHSCEPNAYTRIIFVNGFPRLGIYALRTI
KKNEEVLIDYGWGEGNELGIVCLCGSSKCRKNI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g1263.t1 CDD cd10531 SET_SETD2-like 199 330 0.0000000
7 g1263.t1 Gene3D G3DSA:2.170.270.10 SET domain 100 333 0.0000000
3 g1263.t1 PANTHER PTHR22884 SET DOMAIN PROTEINS 116 331 0.0000000
2 g1263.t1 Pfam PF17907 AWS domain 158 192 0.0000002
1 g1263.t1 Pfam PF00856 SET domain 209 311 0.0000000
8 g1263.t1 ProSiteProfiles PS51215 AWS domain profile. 147 196 11.6370000
9 g1263.t1 ProSiteProfiles PS50280 SET domain profile. 198 311 18.7370000
5 g1263.t1 SMART SM00570 shorttest3 147 197 0.0023000
6 g1263.t1 SMART SM00317 set_7 198 317 0.0000000
4 g1263.t1 SUPERFAMILY SSF82199 SET domain 123 331 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:0005515 protein binding MF
GO:0018024 histone-lysine N-methyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed