Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chymotrypsin-C.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12644 g12644.t1 isoform g12644.t1 24987549 24990603
chr_1 g12644 g12644.t1 exon g12644.t1.exon1 24987549 24987564
chr_1 g12644 g12644.t1 cds g12644.t1.CDS1 24987549 24987564
chr_1 g12644 g12644.t1 exon g12644.t1.exon2 24989681 24989866
chr_1 g12644 g12644.t1 cds g12644.t1.CDS2 24989681 24989866
chr_1 g12644 g12644.t1 exon g12644.t1.exon3 24989924 24990223
chr_1 g12644 g12644.t1 cds g12644.t1.CDS3 24989924 24990223
chr_1 g12644 g12644.t1 exon g12644.t1.exon4 24990304 24990528
chr_1 g12644 g12644.t1 cds g12644.t1.CDS4 24990304 24990528
chr_1 g12644 g12644.t1 exon g12644.t1.exon5 24990590 24990603
chr_1 g12644 g12644.t1 cds g12644.t1.CDS5 24990590 24990603
chr_1 g12644 g12644.t1 TSS g12644.t1 NA NA
chr_1 g12644 g12644.t1 TTS g12644.t1 NA NA

Sequences

>g12644.t1 Gene=g12644 Length=741
ATGTCATCTCATCATGTATTTTCAATTCGACGTATAAATTCTTGTGGTGTTTCGAAATTT
GAAAGAAATAAAAGTTTTATTGGGCTTGTAGTTAATGGTGATGAAAGTAAACCAGGTGAA
TGGCCATTGATTGTTTCAATGTTTAGAAAAGAAAAATATTTTTGTGGTTCATCTTTGATT
TCTGATTTGCATTTGTTATCTGCTGCTCATTGTTTCGAATATTTTGGAATCACTTTTCAA
CTTAACGATTATTTTGCTCTTCTTGGTCGATTCAATTTGAAAGACAACAACGAGAAGTTT
TCAGTCAATCGAAGTTTTTCTTCAATTTTTCTTCATTCTGAGTTTAATAATACAGCTGAA
GCTTATCGTAGCAATGCTGACATTGCAGTTATTCAAATGTCAGAAAGAGTTCAATTTTCA
GATTTTATACAACCAGTTTGTCTTCCTGAGCCAAATTCTAATTTAGAAAATTTTGATGGA
ATTGTTGTTGGTTATGGCAAAAATCCTCTGTATAGTTACATTGTGGCTGAAAGAAGTTTT
TGTGCAGGTGGCACTGATGCGATTCCATGTTTGGGAGATTCTGGTGGAGGATTTTATGTA
AAAAATAACAAAAGTGGAAAATACGAAACGAAAGGAATTGTGTCACAAGCACAACATAAT
GGTTGTGATCCAAAAGTTTATGTTGCTTTCGTTGATGTTACCAAGTTTATTGACTGGATT
ATTGAAAAAATGAATGAATAA

>g12644.t1 Gene=g12644 Length=246
MSSHHVFSIRRINSCGVSKFERNKSFIGLVVNGDESKPGEWPLIVSMFRKEKYFCGSSLI
SDLHLLSAAHCFEYFGITFQLNDYFALLGRFNLKDNNEKFSVNRSFSSIFLHSEFNNTAE
AYRSNADIAVIQMSERVQFSDFIQPVCLPEPNSNLENFDGIVVGYGKNPLYSYIVAERSF
CAGGTDAIPCLGDSGGGFYVKNNKSGKYETKGIVSQAQHNGCDPKVYVAFVDVTKFIDWI
IEKMNE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g12644.t1 CDD cd00190 Tryp_SPc 30 240 1.10011E-42
9 g12644.t1 Gene3D G3DSA:2.40.10.10 - 28 167 1.7E-31
8 g12644.t1 Gene3D G3DSA:2.40.10.10 - 42 145 1.7E-31
10 g12644.t1 Gene3D G3DSA:2.40.10.10 - 170 246 2.1E-14
4 g12644.t1 PANTHER PTHR24260 - 23 167 1.5E-44
6 g12644.t1 PANTHER PTHR24260:SF129 MODULAR SERINE PROTEASE 23 167 1.5E-44
3 g12644.t1 PANTHER PTHR24260 - 176 245 1.5E-44
5 g12644.t1 PANTHER PTHR24260:SF129 MODULAR SERINE PROTEASE 176 245 1.5E-44
2 g12644.t1 Pfam PF00089 Trypsin 30 168 1.4E-23
1 g12644.t1 Pfam PF00089 Trypsin 174 240 4.6E-7
12 g12644.t1 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 66 71 -
14 g12644.t1 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 30 245 20.204
13 g12644.t1 SMART SM00020 trypsin_2 29 240 1.5E-30
7 g12644.t1 SUPERFAMILY SSF50494 Trypsin-like serine proteases 14 245 2.19E-52

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed