General information for g1268.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1268 is located on chr_3: 9192471..9194896 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1268 | g1268.t1 | isoform | g1268.t1 | 9192471 | 9194896 |
| chr_3 | g1268 | g1268.t1 | exon | g1268.t1.exon1 | 9192471 | 9192736 |
| chr_3 | g1268 | g1268.t1 | cds | g1268.t1.CDS1 | 9192471 | 9192736 |
| chr_3 | g1268 | g1268.t1 | exon | g1268.t1.exon2 | 9193242 | 9193313 |
| chr_3 | g1268 | g1268.t1 | cds | g1268.t1.CDS2 | 9193242 | 9193313 |
| chr_3 | g1268 | g1268.t1 | exon | g1268.t1.exon3 | 9193726 | 9194313 |
| chr_3 | g1268 | g1268.t1 | cds | g1268.t1.CDS3 | 9193726 | 9194313 |
| chr_3 | g1268 | g1268.t1 | exon | g1268.t1.exon4 | 9194782 | 9194896 |
| chr_3 | g1268 | g1268.t1 | cds | g1268.t1.CDS4 | 9194782 | 9194896 |
| chr_3 | g1268 | g1268.t1 | TSS | g1268.t1 | NA | NA |
| chr_3 | g1268 | g1268.t1 | TTS | g1268.t1 | NA | NA |
Sequences
>g1268.t1 Gene=g1268 Length=1041
ATGGAATCATTAAGAGGAAATTCAAGTGAATCAATCAATGCTTTTACAAGTAGTGATATG
AAAGCCTATGAGCTGTTTCAAACAGAAGAAGTGCCTGTGATTGACCTTACAGAAGTGCTA
TCTGGTCTATCTGAATTGTATTTAATGATTTCACATATCGGCGATATTGATAAAGAAAAC
TTCATTTGTTTGGAAAAATTGACGGAAAATTTGCACGGATTTATCAGTACAAATGATAAA
GAAAGACATTCATTGTCTACAGACTTCAAAAATATCAGGTGTGCATTACTTTATTTTATT
CAATTACATGAAAACCAGAAAGTTGAACTTTACCAAAATTTGGTTAATTTCACTAATATA
TGTTGCTACTGCGTTGTATCAGAATCTAAAGATTGCACTAATATCGAACAGTTTATGAAA
ATAATAGTGAAAAGATCAAAAGAAGGAGGTACAATAGCAACAAAATTAGATTCACGTTTT
AGCAAACCTAAAATTAATTTAATTAAGAGGCAAATTAGTCATGTATCATCTCCAATAGTA
ATGCTATCCAGCAGATATGAAATATTATCATTTCAAGACTTTATGAACATTCCCACAGAT
GCAATTGAACAACAACATCTTGCTGCATTTAAAAATTTTAAAAAAATTTACGATCAATTT
ACCTCAAGAAAATTTAACAAAAAAACAAAAGAAATTCTAAAAGAGAATGCAGCTGGAACA
CCAATTTCACTTTTATATGACATTCCTCCATTTGCCAACGATAGTTCACAGGTCTTGTCC
TTGGAGCCACTAGAAAATATGACTACAGCACCAACACTTCAAGACCAGCAGTTATCATCT
ATTTGTGACCATTATGAGGTGAATTATGCCGAAATGCACGTATCACCATTTGAATTTGAG
TCGGAACGTCAGGAAATTCGACCACTTTTGCTTTCTGTTACAATTACATCAATTCTAATT
GATGATGTTGACGATTCTTTGTCTAAGCTTATTATTACAGAGATGATACGGAAAATGATT
CCAACACAAATGAGCAGCTGA
>g1268.t1 Gene=g1268 Length=346
MESLRGNSSESINAFTSSDMKAYELFQTEEVPVIDLTEVLSGLSELYLMISHIGDIDKEN
FICLEKLTENLHGFISTNDKERHSLSTDFKNIRCALLYFIQLHENQKVELYQNLVNFTNI
CCYCVVSESKDCTNIEQFMKIIVKRSKEGGTIATKLDSRFSKPKINLIKRQISHVSSPIV
MLSSRYEILSFQDFMNIPTDAIEQQHLAAFKNFKKIYDQFTSRKFNKKTKEILKENAAGT
PISLLYDIPPFANDSSQVLSLEPLENMTTAPTLQDQQLSSICDHYEVNYAEMHVSPFEFE
SERQEIRPLLLSVTITSILIDDVDDSLSKLIITEMIRKMIPTQMSS
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed