General information for g12690.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12690 is located on chr_1: 25288103..25289183 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12690 | g12690.t1 | TTS | g12690.t1 | 25287801 | 25287801 |
| chr_1 | g12690 | g12690.t1 | isoform | g12690.t1 | 25288103 | 25289093 |
| chr_1 | g12690 | g12690.t1 | exon | g12690.t1.exon1 | 25288103 | 25288144 |
| chr_1 | g12690 | g12690.t1 | cds | g12690.t1.CDS1 | 25288103 | 25288144 |
| chr_1 | g12690 | g12690.t1 | exon | g12690.t1.exon2 | 25288263 | 25289093 |
| chr_1 | g12690 | g12690.t1 | cds | g12690.t1.CDS2 | 25288263 | 25289093 |
| chr_1 | g12690 | g12690.t1 | TSS | g12690.t1 | 25289225 | 25289225 |
Sequences
>g12690.t1 Gene=g12690 Length=873
ATGTTAAAGCAATCATGCATTCAATTTGGTTATGAAAAATCATTATGCGATGTAATTAGT
GAAAATAACAAGAATACAACAAAAATAGAAGAAGAACTTCAACCTTATGTTGCAAAAATT
AAAGTTGTCATAACTATTTTGAATTCAAGTGTTCCAGCAGTTTTACAACTTTTCCTCGGA
TCTTGGTCTGATAAAAATGGAAGGAAAAAAGTAATAAATTCTGCTGCACTTGGGTTTGTT
TTGACACACACATCAATTACTGCAGTTTGCTATTATTCAGAGAATATTCTTCCATTACCA
GCATGGATATTCATAATTTGTTATATTCCTGTTAATTTTCTTGGTGGATTTTCATCAATT
ATGATAACAACATTTTGCTATATAACAGATATTTGTGAAAAACCGAATCGACCTTATCAT
TTCACATTAGTTGAACTTATGATGGTGACGAGTATATTTTTTGGAGCTATATTATGCTCT
TTCATCCTATCAATGTCAAATGTCATATTTGTGTTTACAACCGCTACTATTTGTACATTA
TTAGGCGCAATAATTGTTATTATTTTTGTCGATGAATCAATACAAATAGTACAAAATTCG
TCATCAAGTTTAAAAAGTATTCTATCAACAAAACACATTATAAAAATGATAAGAACTTGT
TTTAAATCAAGAAAACTTTATGGAAGGTCAATTTTATTAAGTTTAATTTTAATAATGACA
TTGAATAGATTTGTAAGTGATGAGGAGAAAATTATTGGTTATTTATATGAAAGAATGGTC
TTTAATTGGACTTTAGAAGATCATAATAATTATCAAGCTGTTCGAATTATTCATTTGCTT
CTCAAACTTGGCATATGTATGCAATATCATTAA
>g12690.t1 Gene=g12690 Length=290
MLKQSCIQFGYEKSLCDVISENNKNTTKIEEELQPYVAKIKVVITILNSSVPAVLQLFLG
SWSDKNGRKKVINSAALGFVLTHTSITAVCYYSENILPLPAWIFIICYIPVNFLGGFSSI
MITTFCYITDICEKPNRPYHFTLVELMMVTSIFFGAILCSFILSMSNVIFVFTTATICTL
LGAIIVIIFVDESIQIVQNSSSSLKSILSTKHIIKMIRTCFKSRKLYGRSILLSLILIMT
LNRFVSDEEKIIGYLYERMVFNWTLEDHNNYQAVRIIHLLLKLGICMQYH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g12690.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 38 | 266 | 2.6E-19 |
| 2 | g12690.t1 | PANTHER | PTHR23507 | ZGC:174356 | 12 | 278 | 2.2E-37 |
| 3 | g12690.t1 | PANTHER | PTHR23507:SF1 | ZGC:174356 | 12 | 278 | 2.2E-37 |
| 1 | g12690.t1 | Pfam | PF07690 | Major Facilitator Superfamily | 48 | 264 | 4.9E-15 |
| 15 | g12690.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 39 | - |
| 22 | g12690.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 40 | 59 | - |
| 13 | g12690.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 60 | 70 | - |
| 23 | g12690.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 71 | 89 | - |
| 17 | g12690.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 90 | 100 | - |
| 18 | g12690.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 101 | 128 | - |
| 11 | g12690.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 129 | 139 | - |
| 19 | g12690.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 140 | 163 | - |
| 16 | g12690.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 164 | 168 | - |
| 20 | g12690.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 169 | 190 | - |
| 12 | g12690.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 191 | 225 | - |
| 21 | g12690.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 226 | 245 | - |
| 14 | g12690.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 246 | 290 | - |
| 9 | g12690.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 46 | 235 | 8.37E-16 |
| 8 | g12690.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 71 | 93 | - |
| 6 | g12690.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 120 | - |
| 4 | g12690.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 141 | 163 | - |
| 5 | g12690.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 168 | 190 | - |
| 7 | g12690.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 226 | 245 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed