Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12690 g12690.t3 isoform g12690.t3 25280707 25289183
chr_1 g12690 g12690.t3 exon g12690.t3.exon1 25280707 25280712
chr_1 g12690 g12690.t3 cds g12690.t3.CDS1 25280708 25280712
chr_1 g12690 g12690.t3 exon g12690.t3.exon2 25287878 25289183
chr_1 g12690 g12690.t3 cds g12690.t3.CDS2 25287878 25289183
chr_1 g12690 g12690.t3 TSS g12690.t3 25289225 25289225
chr_1 g12690 g12690.t3 TTS g12690.t3 NA NA

Sequences

>g12690.t3 Gene=g12690 Length=1312
ATGAGTTCAATAAAATTATATTTATTAGAATTATCAGTGTTTCTTTTTAATTTTTCATCT
ATATTAACATCAACATTATTAGTAAATCAAATGTTAAAGCAATCATGCATTCAATTTGGT
TATGAAAAATCATTATGCGATGTAATTAGTGAAAATAACAAGAATACAACAAAAATAGAA
GAAGAACTTCAACCTTATGTTGCAAAAATTAAAGTTGTCATAACTATTTTGAATTCAAGT
GTTCCAGCAGTTTTACAACTTTTCCTCGGATCTTGGTCTGATAAAAATGGAAGGAAAAAA
GTAATAAATTCTGCTGCACTTGGGTTTGTTTTGACACACACATCAATTACTGCAGTTTGC
TATTATTCAGAGAATATTCTTCCATTACCAGCATGGATATTCATAATTTGTTATATTCCT
GTTAATTTTCTTGGTGGATTTTCATCAATTATGATAACAACATTTTGCTATATAACAGAT
ATTTGTGAAAAACCGAATCGACCTTATCATTTCACATTAGTTGAACTTATGATGGTGACG
AGTATATTTTTTGGAGCTATATTATGCTCTTTCATCCTATCAATGTCAAATGTCATATTT
GTGTTTACAACCGCTACTATTTGTACATTATTAGGCGCAATAATTGTTATTATTTTTGTC
GATGAATCAATACAAATAGTACAAAATTCGTCATCAAGTTTAAAAAGTATTCTATCAACA
AAACACATTATAAAAATGATAAGAACTTGTTTTAAATCAAGAAAACTTTATGGAAGGTCA
ATTTTATTAAGTTTAATTTTAATAATGACATTGAATAGATTTGTAAGTGATGAGGAGAAA
ATTATTGGTTATTTATATGAAAGAATGGTCTTTAATTGGACTTTAGAAGATCATAATAAT
TATCAAGCTGTTCGAATTATTGTAAAAGTTTTAGGAACATTTTTTGCAATGTCTGTACTT
AAAAAATTGTTTGGATTTTCTGATATTATTTTGATATGTTTAGCAATTTTTCTAAATTTT
ATTGATAATGTTTTTATAGCATTTGCTTCTCAAACTTGGCATATGTATGCAATATCATTA
ATTTCTTGTATAAAAATGATTATTCATCCTTTGTGTCGATCGATAATTTCCTCAACGGTA
TCTAAAAATGAAATGGGAAAAGTCATGAGTTTCACATCATCAATTGAATCACTTGCAAAT
GTCATTGCACCTACAATTTTGATTGCTATCTATGAAGCAACTTATATCACTTTTCCTGGT
GCATTATTTCTTGTTTGTGCTGCAATTTGCTTTATGAATTTATTTATTTTCA

>g12690.t3 Gene=g12690 Length=437
MSSIKLYLLELSVFLFNFSSILTSTLLVNQMLKQSCIQFGYEKSLCDVISENNKNTTKIE
EELQPYVAKIKVVITILNSSVPAVLQLFLGSWSDKNGRKKVINSAALGFVLTHTSITAVC
YYSENILPLPAWIFIICYIPVNFLGGFSSIMITTFCYITDICEKPNRPYHFTLVELMMVT
SIFFGAILCSFILSMSNVIFVFTTATICTLLGAIIVIIFVDESIQIVQNSSSSLKSILST
KHIIKMIRTCFKSRKLYGRSILLSLILIMTLNRFVSDEEKIIGYLYERMVFNWTLEDHNN
YQAVRIIVKVLGTFFAMSVLKKLFGFSDIILICLAIFLNFIDNVFIAFASQTWHMYAISL
ISCIKMIIHPLCRSIISSTVSKNEMGKVMSFTSSIESLANVIAPTILIAIYEATYITFPG
ALFLVCAAICFMNLFIF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g12690.t3 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 66 437 9.5E-30
2 g12690.t3 PANTHER PTHR23507 ZGC:174356 6 434 2.4E-69
3 g12690.t3 PANTHER PTHR23507:SF1 ZGC:174356 6 434 2.4E-69
1 g12690.t3 Pfam PF07690 Major Facilitator Superfamily 73 404 6.2E-23
26 g12690.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
31 g12690.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 28 -
20 g12690.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 29 100 -
38 g12690.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 101 119 -
24 g12690.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 120 130 -
30 g12690.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 131 158 -
19 g12690.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 159 169 -
32 g12690.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 170 193 -
27 g12690.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 194 198 -
39 g12690.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 199 220 -
17 g12690.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 221 255 -
36 g12690.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 256 275 -
28 g12690.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 276 301 -
29 g12690.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 302 320 -
18 g12690.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 321 328 -
33 g12690.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 329 349 -
23 g12690.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 350 354 -
34 g12690.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 355 376 -
22 g12690.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 377 387 -
35 g12690.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 388 410 -
25 g12690.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 411 415 -
37 g12690.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 416 436 -
21 g12690.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 437 437 -
15 g12690.t3 SUPERFAMILY SSF103473 MFS general substrate transporter 74 435 9.16E-28
4 g12690.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 6 28 -
5 g12690.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 101 123 -
11 g12690.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 128 150 -
8 g12690.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 171 193 -
10 g12690.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 198 220 -
12 g12690.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 256 275 -
7 g12690.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 301 320 -
13 g12690.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 327 349 -
14 g12690.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 353 375 -
9 g12690.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 388 410 -
6 g12690.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 414 436 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0022857 transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed