General information for g12696.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit.
Parent gene
- The parent gene g12696 is located on chr_1: 25323738..25325043 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12696 | g12696.t5 | isoform | g12696.t5 | 25323738 | 25325043 |
| chr_1 | g12696 | g12696.t5 | exon | g12696.t5.exon1 | 25323738 | 25323745 |
| chr_1 | g12696 | g12696.t5 | cds | g12696.t5.CDS1 | 25323740 | 25323745 |
| chr_1 | g12696 | g12696.t5 | exon | g12696.t5.exon2 | 25323805 | 25324298 |
| chr_1 | g12696 | g12696.t5 | cds | g12696.t5.CDS2 | 25323805 | 25324298 |
| chr_1 | g12696 | g12696.t5 | exon | g12696.t5.exon3 | 25324360 | 25324513 |
| chr_1 | g12696 | g12696.t5 | cds | g12696.t5.CDS3 | 25324360 | 25324513 |
| chr_1 | g12696 | g12696.t5 | exon | g12696.t5.exon4 | 25324613 | 25324759 |
| chr_1 | g12696 | g12696.t5 | cds | g12696.t5.CDS4 | 25324613 | 25324690 |
| chr_1 | g12696 | g12696.t5 | exon | g12696.t5.exon5 | 25324828 | 25325043 |
| chr_1 | g12696 | g12696.t5 | TSS | g12696.t5 | NA | NA |
| chr_1 | g12696 | g12696.t5 | TTS | g12696.t5 | NA | NA |
Sequences
>g12696.t5 Gene=g12696 Length=1019
TTGTTTTTTAATAAACCTTCTTTAGCAGATAACAAAATTTTAAAATTTACGAAAAATAAA
CAAATGTGACCGGCAAATTTAACTTCGATTATTCAAAAAACAAACGACCGTTACATGAAT
CTAATTCTCCGAATTTCAACTTCGAAACTTCGAAAAAAATTCAAGATCAAAAAATTTGCA
ATTTTTTTAATTTACGCGGTTTCTAAAGCTATATTGAGCTTGTGGTGAAAGGTGAAAATT
TAGAAAAGAAATTTCTTGAGGAAAAAGTAAGAACTTTTGAAAATAATGGCGGACCAAAAA
AGCGATGATTCACTTTATCCTATTGCTGTTCTAATTGATGAATTAAAGAATGAAGATATT
CAGCTCCGATTAAACTCGATTAAAAAATTGTCAACAATTGCATTAGCTCTTGGTGAAGAG
AGGACTAGAACTGAGTTGGTTCCGTTTTTGACAGAGACGATTTATGATGAAGATGAAGTT
TTACTTGCACTTGCCGAGCAGCTGGGAACTTTCACACATCTTGTTGGTGGACCAGATTAC
GCGATGTATTTAATTCCTCCTTTAGAGAGTTTGGCTACTGTTGAAGAAACAGTCGTTCGT
GATAAGGCAGTTGAATCACTTCGTAATGTTGCTGCACAACATAGTGCTCACGACTTGGAA
GTTCATGTTATTCCAACACTTCAACGTTTGGTTTCTGGCGAATGGTTTACATCGCGCACA
TCAGCATGTGGATTATTTTCTGTTTGCTATCCTCGCGTGCCAGCATCAGTCAAGGCTGAA
TTGCGCAATTTATTTAGACAATTGTGTCAAGATGAGACTCCTATGGTTCGTCGTGCGGCT
GCAGGCAAATTAGGAGAGTTTGCTAAAGTGGTGGAAGTTGAATTTCTCAAGTCAGATTTG
ATTCCAATGTTTGTTCAATTGGCTCAGGATGATCAAGATTCTGTACGCTTACTTGCTGTA
GAGGCATGTGTTAGTATTGCTCAACTTTTACAACAAGAGGATGTTGAAACGTTGGTGAT
>g12696.t5 Gene=g12696 Length=244
MADQKSDDSLYPIAVLIDELKNEDIQLRLNSIKKLSTIALALGEERTRTELVPFLTETIY
DEDEVLLALAEQLGTFTHLVGGPDYAMYLIPPLESLATVEETVVRDKAVESLRNVAAQHS
AHDLEVHVIPTLQRLVSGEWFTSRTSACGLFSVCYPRVPASVKAELRNLFRQLCQDETPM
VRRAAAGKLGEFAKVVEVEFLKSDLIPMFVQLAQDDQDSVRLLAVEACVSIAQLLQQEDV
ETLV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g12696.t5 | Gene3D | G3DSA:1.25.10.10 | - | 2 | 244 | 0.0000000 |
| 2 | g12696.t5 | PANTHER | PTHR10648 | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT | 2 | 244 | 0.0000000 |
| 3 | g12696.t5 | PANTHER | PTHR10648:SF9 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 65 KDA REGULATORY SUBUNIT A BETA ISOFORM | 2 | 244 | 0.0000000 |
| 1 | g12696.t5 | Pfam | PF13646 | HEAT repeats | 169 | 232 | 0.0000015 |
| 6 | g12696.t5 | ProSiteProfiles | PS50077 | HEAT repeat profile. | 12 | 50 | 9.5060000 |
| 7 | g12696.t5 | ProSiteProfiles | PS50077 | HEAT repeat profile. | 166 | 204 | 10.6580000 |
| 8 | g12696.t5 | ProSiteProfiles | PS50077 | HEAT repeat profile. | 205 | 243 | 13.6080000 |
| 4 | g12696.t5 | SUPERFAMILY | SSF48371 | ARM repeat | 8 | 237 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
