General information for g12718.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Importin subunit alpha-4.
Parent gene
- The parent gene g12718 is located on chr_1: 25443485..25444655 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12718 | g12718.t3 | isoform | g12718.t3 | 25441816 | 25443107 |
| chr_1 | g12718 | g12718.t3 | exon | g12718.t3.exon1 | 25441816 | 25442986 |
| chr_1 | g12718 | g12718.t3 | cds | g12718.t3.CDS1 | 25442717 | 25442962 |
| chr_1 | g12718 | g12718.t3 | exon | g12718.t3.exon2 | 25443042 | 25443107 |
| chr_1 | g12718 | g12718.t3 | TSS | g12718.t3 | NA | NA |
| chr_1 | g12718 | g12718.t3 | TTS | g12718.t3 | NA | NA |
Sequences
>g12718.t3 Gene=g12718 Length=1237
ATCAAAGCAGGAGCAATTCCACCTTTCTGCGAATTACTAAGATGTCATGATACTCAAGTT
ATCAATGTAATTTTGGATGGTATCAATAATATGCTAAAAATGGCAGGTCCAAATGCAGAA
CAAATTGCTATGCTAATAGAAGAATGCGATGGTTTAACGAAAATCGAGGATCTGCAAAAT
CATGAGAATGTCGAAATTTATAAGCTGGCATATGATATTATTGAGCAGTACTTTAGCGAT
GAAGTTGGCGAAGATGATGCTGGTATTAATCCACAAGTAGATGACGGTGGCAACTTCCAA
TTTAATCCAAATCAAAATCTTGAATTCAACTTTTAAACAACAACATATATACATACACAG
AGTAAATTAGAAATAACTCATGCGACCCGGTACCGATAATTTTTCACACGAGCTAATACT
GCATTCATTGAAGAAAGAAATTTTTTATACATACATATTCGTTTCATGAGGAAAAAAAAG
TATCTTCTCTCCTTTCTTTTTATCTGACTTTATATATACACTGATCATTTGAAATAACAA
AAAAAGTTTATATACATATAAAAATATTCGTGAATATAGAAGAGAAATTAGGAGCATGTT
CATTTATGAATTGTCAAAAAGTTTATAATTTTTCTAAATATATCTAAGTTATCATCACTT
TAATTTATGCTCTTAAATTTCTCACAATTATTTTTTTTTTCCTTAAAAAAAAAGTAACAA
AGGTTATTATAGACTTTCTTCTCCTTCTTCCGCTCCTTAATAAGCATAGATATGCAGCAG
TTATAATATTTAATTTTTTAAACTTGCACATATTGAAGCAAAACTTTTAAAAAAGAAAGA
AAAAATGTTGAATGATTCTTTCATGGCTCTCCAATAACTTTTAAAAGAAATGAAATGACG
GATTAAAGAAAGCTCTATTTAGACTTTTCATAGAATTATCTACTATGTACATGAAAGAAT
GAAACATAAAAATTTATTAATCCCTTGTGGATAAGTAAGCAAAAAACAGCAGTGTAACGT
AACCCTTTTCTCAGTTTAAAATAAAAAAAAAATCAAATAAAATACTAGAAATAAAAGAAC
TCATCCTTTTTTTGACATTTTTAAATATTTCAGGCATGCATGATATGACATGACAATTGA
TTTCAAATAGAAGAAAATCTAACTGAGTATAACGATTTTTCAGAATTCAAATTCGTGCCC
CTTGAAAAAAAAACAACTGACCCCTGAATATTTTTCA
>g12718.t3 Gene=g12718 Length=81
MLKMAGPNAEQIAMLIEECDGLTKIEDLQNHENVEIYKLAYDIIEQYFSDEVGEDDAGIN
PQVDDGGNFQFNPNQNLEFNF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g12718.t3 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 50 | 0e+00 |
| 2 | g12718.t3 | PANTHER | PTHR23316 | IMPORTIN ALPHA | 1 | 72 | 0e+00 |
| 3 | g12718.t3 | PANTHER | PTHR23316:SF28 | IMPORTIN SUBUNIT ALPHA | 1 | 72 | 0e+00 |
| 1 | g12718.t3 | Pfam | PF16186 | Atypical Arm repeat | 10 | 62 | 0e+00 |
| 4 | g12718.t3 | SUPERFAMILY | SSF48371 | ARM repeat | 9 | 51 | 1e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
