General information for g12720.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12720 is located on chr_1: 25447533..25449611 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12720 | g12720.t10 | isoform | g12720.t10 | 25447533 | 25449299 |
| chr_1 | g12720 | g12720.t10 | exon | g12720.t10.exon1 | 25447533 | 25448296 |
| chr_1 | g12720 | g12720.t10 | cds | g12720.t10.CDS1 | 25448211 | 25448296 |
| chr_1 | g12720 | g12720.t10 | exon | g12720.t10.exon2 | 25448619 | 25448872 |
| chr_1 | g12720 | g12720.t10 | cds | g12720.t10.CDS2 | 25448619 | 25448872 |
| chr_1 | g12720 | g12720.t10 | exon | g12720.t10.exon3 | 25448953 | 25449107 |
| chr_1 | g12720 | g12720.t10 | cds | g12720.t10.CDS3 | 25448953 | 25448960 |
| chr_1 | g12720 | g12720.t10 | exon | g12720.t10.exon4 | 25449165 | 25449299 |
| chr_1 | g12720 | g12720.t10 | TSS | g12720.t10 | NA | NA |
| chr_1 | g12720 | g12720.t10 | TTS | g12720.t10 | NA | NA |
Sequences
>g12720.t10 Gene=g12720 Length=1308
AATGAATGATGTTAGTTGAATTAAAATTTCAAATATATTTCACATCCATAATTCTTTTAT
TCATTAATATTTTGATGTCACATGTGTCAAGTTTATATGAACCATTTATTTAATCTGTTA
TAAAATGCGTATAGAAAAATTGATTATACAAAAAGAAAACATTGAAAATAAAAATGAGAT
TATAAATTAAGAATTGTGCGAATACTTTTTCCGGCTTTTAATAAATCAAAGCCCTCATTA
ATATCATCCAATTTCATAGTATGTGTTATGAATTTGTCAACTTTCAGTTTTCCATTCATG
AGTTCATCAACAAGTTTGGGAACTGCATCACGACTTTTATAGCCTCCATAAAGCGTCCCT
TTGAGTGTTTTTCCAGCTAGAAATTGTCCAGGAGAAATGTTCAAGTTATCAGTTAAGCCT
GCTACACCAATTAAAACACAAACTCCATTTCCAATAGCACAGCAATCAAAAGCTTGCTTC
ATCGTTTGAATTCTTCCAATACACTCAAAAGTATACTCAATAGCACCACCATATTTTTCC
ATTAAATATTGCTCAATAGGTACACTCAATTCTGATGGATTTACAAAATCTGTGCAACCC
ATTTCAGCTGCTAGTTTGAATTTTTCTGGAATAATATCAATTCCGATAATAGTCTTTGCA
CCCGCTTTTTTACATCCCATGATAGTTGATAAGCCTAGTGTGCCCAATCCCCATACAGCA
CAAGTGCTATTTTCTTTAACACCCGCAGAATTTATTGCTGCTCCCACACCAGTTGAAATA
CCACAACTTATAAGAGCAGCTTCCTTCATTGGAGCTTCAGGGTTGATTTTTGCCAAATTA
ATTTCACTTATCACTGAATATTCTGTGAATGTCGAACATCCAACAAAAGTATACAAAGTT
TCTCCTCGACACCGAAAACGAGATGTACCATCTGACATTACGCCTTTGACTTGTGATCCC
ATAAACTCTAAACAGCTATTAGCATTTTTATCTTTACAAACGCGACATCTGTTACACTTG
CGGTAAAAATAAAGGCAAAACATGATCTCCTACACCCACACTTTCTACGCCTTCTCCAAT
TGATTCAACAATTGCAGAGGCTTCATGACCGAGAATTATTGGAAATTGAACTCCCAAAAT
TTTTCCTGTTGATGCACTTACATCAGAGAAGCAAATTCCAGTTGAGACAATTTTAACTCG
CACTTCACCAGCTTTTGGTGGATCAACTTCAATTTGTTCAATGACAAATGGCTCATTTGC
CTTCCAAACAACTGCAGCTCGACACGTTATAGTTTTTCCTTCAGTCAT
>g12720.t10 Gene=g12720 Length=115
MIVDKPSVPNPHTAQVLFSLTPAEFIAAPTPVEIPQLIRAASFIGASGLIFAKLISLITE
YSVNVEHPTKVYKVSPRHRKRDVPSDITPLTCDPINSKQLLAFLSLQTRHLLHLR
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
