General information for g12723.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Exportin-6.
Parent gene
- The parent gene g12723 is located on chr_1: 25464478..25465894 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12723 | g12723.t1 | TSS | g12723.t1 | 25462324 | 25462324 |
| chr_1 | g12723 | g12723.t1 | isoform | g12723.t1 | 25462416 | 25465599 |
| chr_1 | g12723 | g12723.t1 | exon | g12723.t1.exon1 | 25462416 | 25462613 |
| chr_1 | g12723 | g12723.t1 | cds | g12723.t1.CDS1 | 25462416 | 25462613 |
| chr_1 | g12723 | g12723.t1 | exon | g12723.t1.exon2 | 25462676 | 25462989 |
| chr_1 | g12723 | g12723.t1 | cds | g12723.t1.CDS2 | 25462676 | 25462989 |
| chr_1 | g12723 | g12723.t1 | exon | g12723.t1.exon3 | 25463046 | 25465599 |
| chr_1 | g12723 | g12723.t1 | cds | g12723.t1.CDS3 | 25463046 | 25465599 |
| chr_1 | g12723 | g12723.t1 | TTS | g12723.t1 | NA | NA |
Sequences
>g12723.t1 Gene=g12723 Length=3066
ATGGAGTCAATAGTTAGTTTAGAGGCACTATTAAATGAATTTTATCATCATTCGACTTCA
AATTTTCGCAAAAAACAAATAGAAGTTGAATTGAAAACGTTTCAAGATAGCAATCAGTCA
CATACAATTTTACTCCAGCACTTATCTATCTGCATGTCAAATCAGTTTCTTTTCTTCTTC
TCTGTATCAACTTTAGAGCTCACAATTACGACGAAGAAATGGATCGAGTTAGATTTAAAA
ACAAGAATTCAAATTCGTGAAGGTCTTTGGTATATTTATTCGAGTTTTCCAACAACAGTT
GGAGCGATGCAGCGAGATAAAATGGCTCAACTGATTGCGTTACTAGGAAAAAGAGAATTT
CCCGATGAACATAGTGAATTTTTCAACCAAATCATGTCTCTTATAAAAATGAAATTTCTT
CTTGGTATTACACTTTTAAAGGCTGTGTCACATGAAATTTGTAGTACAAAAATTGATACG
ACCTATCATCAAAGAAATAAATTTCTTCAGAGCATGACTCTATGTTTAAGTGATATTATT
TGTATGCTTGGAAAGTTCCTTACACTTTGTGTATGTTACATCAATAATAATGAACTAGTC
GTTGGTCCTGATATTGATTTTGATATGCATAACTCATTACCTAATGATGAACGATTCATT
TTCTGCTGTACTGAACTTCTTAACACCATAGGAAGTCTATTTACATGGATTCCACCAAAT
ATAGATTCAATAATGAGTGTAGAGTTTTTCAACAATATTTATGAGCTTTGCAGTTATACT
TCCGAAAAGTACATAAATATTCATTTAACAGCTCTCACCACAATTTGTGAGCTATTTTAT
ATACAAAAGCAATTGCCTCAAGTGCAAGTTCAAGCAAACGGAATAACTGAATTGCTACAA
CAGAAAAATTTAATGATTTCAAATGAAGAGTATCAAGACAAATTTTGTGAATTACTAAAA
CTTTTTATTCAACAACAATGGGGAAAATTTGTCAATCAACCAGAATTTCCAGCAAAAGAA
TTTCTGCTTCATCTATTTCGATTTACATTTTATGAAAATGTTGCTGCTTTGACATTTTCT
GAACGTCTTTCATTGTGGATATCAATAATCAAATCATTTAATGAGAAGATTGCACCACGT
TATACAGAAACAGTTTGTCATTTAATTTCAAACGTGATAATTAAAATGCAGTTCAGTACC
AATAGTGAATTTCTTGATCTCCTCGATACAGAAGAATTAGATGAAAATATGGAAACAGAA
CTTCAAAGCTATAGAAATAATTGTATAGAAGTCATACTCACTGCTGCTGAAATTGAGCCA
TGCAAAATATTTGATCTCTTAAACTTAGAATTTACAAAAGAGACTGGAAATTTAAAACAT
TTTGTCACCATTTTGAACGATTTGCCTGATTATACAAAAGATGTAACGTCAAAATCTCGT
ATGAATTTGAATCAAATCGTAAGATTTTCAGCTGATCCAACATTTTATTTGCATTGTATG
TGTCGTGATCTTACAACTCTGTTGCAAACCATCACACAGACTTCAAATGTAATTCTTACA
TTTACTTGCGAGCGAAGCAATTCTATAACAAATGTCATTAGAACTTGCATTTTAACTTTG
AAATTAGCTAATCAAAAGAAACTTCATCTATATGATCTTGATCCACAATTAAAGAGTGAT
TTGATTGAATTACAAGCACAAATATTGCTCTCTGTCAGAAGTTTAATGCTGTTGCGAACT
GAAATTTATGATAACCATAATGAAATTTTTCAACTGATTGATTCAGTTATGCAGATTATT
CTACCATCTCATTTTGGATTTATTGAGCCATCATTAGTTATAAATGCTGCAGCACAATTA
ATGATTACTATAACAGGTACATTACGGCCAAATTATTTCCTTAAAAATACATTAGTGCAA
GAATTGCTACATAGCGATTTGAGTAGATATGATCCGCAAATTCGTTTGCAAATTAAAATG
ATTGTTTTCAATGCACTTATATTGAATTATTCAAATATTGCTGTGAATTTAACAGAAGAG
CAAGAGTATGAGAAGAGAGGTGAAATATGTCAACAATACGTTGCATTTATTAGTTACAAA
TTTCTTTCTGCAAATATTACAACTAATCATGTGACTGTGAGAGAAGAAATTCGTGCTGAA
TTAAAAGACTATGAACATATTTTAAATACATATGAGGACACCAACAACTTTTCAAAACAA
ATTCTTCTCGGTGCAATTAATCCAATTATCAAGAAATCAATCGAAATATTCCAATTTACT
GCCAAATCAAGTTACCAATACGATGAAAACGATTTGACTGCAATTATTGATTTCAATTTG
AGCATTGTCAAATGTTTACAGATGCAATTGGGTTCTGATTTTGTGATAAATATTGTGAGA
CTGTTTTTAGAAGTAGCATCTACACCAAATAGAAGTACACACGCGTTGAATAAACTTTTG
GAAATGTTAATTTACATTGTTCAACACACTGGTGCAACATCGACTCAACTTTTGCCAGAC
ATTCTCAAATTAACACTTGATGATCTCTTGCGTGCAAACGTCGATATTTCATTTAATTTA
TTCTCACTCTATGATTCCATTCTACAAAATCATTGGAATTATTTTCAAAAGAATATTCCA
AACAATATGAGAAATAACCAAGAAGATTTGATGAAAATTCTCACAACTTATGGTCATTTT
TTGTGCAATACACCGATAGATGCGAATGTTGGTCGTGTAATTTTGAATTCATTAGAAAAA
TTGCATGAAAAATGGCGATTGTATGATAAAGCATTTTTCAATAATTCGCTTCTTAGATCA
TTTTTATGTACTCTCTTGCGCTTAATTATTTCTCCAGAAGGAATTCTTTTCTATGATCAA
ATTATATCGATAATATTTTACATGTCTGAGCAGAATAAGGTTGTGCTGCAAGAATGCTTT
GCATCAGTATTAACAGATAAAGAGAAAATTGTTCAAATATGTCAAGTAACTGATGTGTGT
ACGTTTTCTCGTCTTATGGAAATTATTATTCAAGACATTCATGTTGTGTCACAGCAACAT
CATTAG
>g12723.t1 Gene=g12723 Length=1021
MESIVSLEALLNEFYHHSTSNFRKKQIEVELKTFQDSNQSHTILLQHLSICMSNQFLFFF
SVSTLELTITTKKWIELDLKTRIQIREGLWYIYSSFPTTVGAMQRDKMAQLIALLGKREF
PDEHSEFFNQIMSLIKMKFLLGITLLKAVSHEICSTKIDTTYHQRNKFLQSMTLCLSDII
CMLGKFLTLCVCYINNNELVVGPDIDFDMHNSLPNDERFIFCCTELLNTIGSLFTWIPPN
IDSIMSVEFFNNIYELCSYTSEKYINIHLTALTTICELFYIQKQLPQVQVQANGITELLQ
QKNLMISNEEYQDKFCELLKLFIQQQWGKFVNQPEFPAKEFLLHLFRFTFYENVAALTFS
ERLSLWISIIKSFNEKIAPRYTETVCHLISNVIIKMQFSTNSEFLDLLDTEELDENMETE
LQSYRNNCIEVILTAAEIEPCKIFDLLNLEFTKETGNLKHFVTILNDLPDYTKDVTSKSR
MNLNQIVRFSADPTFYLHCMCRDLTTLLQTITQTSNVILTFTCERSNSITNVIRTCILTL
KLANQKKLHLYDLDPQLKSDLIELQAQILLSVRSLMLLRTEIYDNHNEIFQLIDSVMQII
LPSHFGFIEPSLVINAAAQLMITITGTLRPNYFLKNTLVQELLHSDLSRYDPQIRLQIKM
IVFNALILNYSNIAVNLTEEQEYEKRGEICQQYVAFISYKFLSANITTNHVTVREEIRAE
LKDYEHILNTYEDTNNFSKQILLGAINPIIKKSIEIFQFTAKSSYQYDENDLTAIIDFNL
SIVKCLQMQLGSDFVINIVRLFLEVASTPNRSTHALNKLLEMLIYIVQHTGATSTQLLPD
ILKLTLDDLLRANVDISFNLFSLYDSILQNHWNYFQKNIPNNMRNNQEDLMKILTTYGHF
LCNTPIDANVGRVILNSLEKLHEKWRLYDKAFFNNSLLRSFLCTLLRLIISPEGILFYDQ
IISIIFYMSEQNKVVLQECFASVLTDKEKIVQICQVTDVCTFSRLMEIIIQDIHVVSQQH
H
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g12723.t1 | Coils | Coil | Coil | 407 | 427 | - |
| 6 | g12723.t1 | Coils | Coil | Coil | 714 | 734 | - |
| 4 | g12723.t1 | Gene3D | G3DSA:1.25.10.10 | - | 2 | 553 | 2.5E-32 |
| 2 | g12723.t1 | PANTHER | PTHR21452 | EXPORTIN-6 | 2 | 1017 | 6.1E-129 |
| 1 | g12723.t1 | Pfam | PF08389 | Exportin 1-like protein | 105 | 257 | 2.9E-5 |
| 3 | g12723.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 1 | 969 | 3.02E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005049 | nuclear export signal receptor activity | MF |
| GO:0006611 | protein export from nucleus | BP |
KEGG
Orthology
- This transcript has been annotated with K25204 (exportin-6)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
