Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Aldo-keto reductase family 1 member B1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12728 g12728.t23 TTS g12728.t23 25507381 25507381
chr_1 g12728 g12728.t23 isoform g12728.t23 25507464 25508906
chr_1 g12728 g12728.t23 exon g12728.t23.exon1 25507464 25507678
chr_1 g12728 g12728.t23 cds g12728.t23.CDS1 25507464 25507678
chr_1 g12728 g12728.t23 exon g12728.t23.exon2 25507838 25508414
chr_1 g12728 g12728.t23 cds g12728.t23.CDS2 25507838 25508153
chr_1 g12728 g12728.t23 exon g12728.t23.exon3 25508839 25508906
chr_1 g12728 g12728.t23 TSS g12728.t23 25508972 25508972

Sequences

>g12728.t23 Gene=g12728 Length=860
ATGGCAGCACCTACTGTTACTCTCAATAATGGCAAACAATTTCCAATCGTTGGCCTTGGT
AATGAAAATCACCACCTGGTGTTGTTGCTCAAGCTGTAAAAGACGCAATTGATGCTGGCT
ATCGTCATTTTGACGGTGCTCATGTATATGAAAATGAGCATGAAGTTGGTGAAGGAATTA
ATGCTAAAATCGCTGAAGGTGTTATCAAACGTGAAGACGTTTTTGTAACATCAAAATTAT
GGTGCACTTTCCATGACCCAAAGGATGTTCGTGGTGCACTCGAGCATACATTGAAACAAT
TAAATTTAGATTATCTTGACTTGTACCTCATGCATTGGCCTATTTGTTATCAAAAATCAA
CTGAATTGTTCCCAAAGAATGAAGCTGGTGAAATTTTGCACGCTAATTTTGATATTCTTG
ACACTTATCGTGCAATGGAGGAACTTGTTGATGCTGGATTGACTAAAAGTATTGGAATTT
CAAACTTCAATATCAAACAAGTTGAGTACATTACTAAAAATGCTCGCATCCAACCAGTCA
CCAATCAAGTTGAATGCAATCCATATTTACTTAATAAAGAATTAAGTGATTTCTGCAAAA
GTAAAAACATTGTCATCACCGCTTATTCACCTCTTGGTTCACCAGCACAAATTTTAATCC
GTTACCAAATTCAACGCGGTCACGTTGTCATACCGAAATCAGTTACGAAGGATCGCATAA
TCAGTAATTTTGATGTTTTCAACTTCACATTGAGCGATTCTGAAATAAAAGATTTGGAAA
ACTTCAACTATACTGAGCGCATTTGTAGCATGTCTCAAGATAAACATCATCCAGCTTATC
CTTTCAATGACGACGCCTAA

>g12728.t23 Gene=g12728 Length=176
MHWPICYQKSTELFPKNEAGEILHANFDILDTYRAMEELVDAGLTKSIGISNFNIKQVEY
ITKNARIQPVTNQVECNPYLLNKELSDFCKSKNIVITAYSPLGSPAQILIRYQIQRGHVV
IPKSVTKDRIISNFDVFNFTLSDSEIKDLENFNYTERICSMSQDKHHPAYPFNDDA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g12728.t23 Gene3D G3DSA:3.20.20.100 - 1 176 8.2E-63
2 g12728.t23 PANTHER PTHR11732:SF482 ZGC:56622 1 105 4.1E-55
4 g12728.t23 PANTHER PTHR11732 ALDO/KETO REDUCTASE 1 105 4.1E-55
3 g12728.t23 PANTHER PTHR11732:SF482 ZGC:56622 104 173 4.1E-55
5 g12728.t23 PANTHER PTHR11732 ALDO/KETO REDUCTASE 104 173 4.1E-55
6 g12728.t23 PRINTS PR00069 Aldo-keto reductase signature 36 53 7.5E-20
7 g12728.t23 PRINTS PR00069 Aldo-keto reductase signature 70 99 7.5E-20
1 g12728.t23 Pfam PF00248 Aldo/keto reductase family 2 104 4.0E-19
9 g12728.t23 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 36 53 -
10 g12728.t23 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 121 136 -
8 g12728.t23 SUPERFAMILY SSF51430 NAD(P)-linked oxidoreductase 1 171 4.06E-47

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0047834 D-threo-aldose 1-dehydrogenase activity MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed