Gene loci information

Transcript annotation

  • This transcript has been annotated as Aldo-keto reductase family 1 member B10.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12728 g12728.t24 TTS g12728.t24 25507381 25507381
chr_1 g12728 g12728.t24 isoform g12728.t24 25507464 25508906
chr_1 g12728 g12728.t24 exon g12728.t24.exon1 25507464 25507765
chr_1 g12728 g12728.t24 cds g12728.t24.CDS1 25507464 25507765
chr_1 g12728 g12728.t24 exon g12728.t24.exon2 25507838 25508198
chr_1 g12728 g12728.t24 cds g12728.t24.CDS2 25507838 25508198
chr_1 g12728 g12728.t24 exon g12728.t24.exon3 25508849 25508906
chr_1 g12728 g12728.t24 cds g12728.t24.CDS3 25508849 25508878
chr_1 g12728 g12728.t24 TSS g12728.t24 25508972 25508972

Sequences

>g12728.t24 Gene=g12728 Length=721
ATGGCAGCACCTACTGTTACTCTCAATAATGGCAAACAATTTCCAATCGTTGGCCTTGCA
TACATTGAAACAATTAAATTTAGATTATCTTGACTTGTACCTCATGCATTGGCCTATTTG
TTATCAAAAATCAACTGAATTGTTCCCAAAGAATGAAGCTGGTGAAATTTTGCACGCTAA
TTTTGATATTCTTGACACTTATCGTGCAATGGAGGAACTTGTTGATGCTGGATTGACTAA
AAGTATTGGAATTTCAAACTTCAATATCAAACAAGTTGAGTACATTACTAAAAATGCTCG
CATCCAACCAGTCACCAATCAAGTTGAATGCAATCCATATTTACTTAATAAAGAATTAAG
TGATTTCTGCAAAAGTAAAAACATTGTCATCACCGCTTATTCACCTCTTGGTTCACCAGG
TCGTCCATGGGCAACACCAGATGACCGAGTATTATTAAAAGAACCAAAACTTTTAGAGAT
CGCTCAGAAGCACAATAAAACACCAGCACAAATTTTAATCCGTTACCAAATTCAACGCGG
TCACGTTGTCATACCGAAATCAGTTACGAAGGATCGCATAATCAGTAATTTTGATGTTTT
CAACTTCACATTGAGCGATTCTGAAATAAAAGATTTGGAAAACTTCAACTATACTGAGCG
CATTTGTAGCATGTCTCAAGATAAACATCATCCAGCTTATCCTTTCAATGACGACGCCTA
A

>g12728.t24 Gene=g12728 Length=230
MANNFQSLALHTLKQLNLDYLDLYLMHWPICYQKSTELFPKNEAGEILHANFDILDTYRA
MEELVDAGLTKSIGISNFNIKQVEYITKNARIQPVTNQVECNPYLLNKELSDFCKSKNIV
ITAYSPLGSPGRPWATPDDRVLLKEPKLLEIAQKHNKTPAQILIRYQIQRGHVVIPKSVT
KDRIISNFDVFNFTLSDSEIKDLENFNYTERICSMSQDKHHPAYPFNDDA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g12728.t24 Gene3D G3DSA:3.20.20.100 - 3 230 3.5E-89
2 g12728.t24 PANTHER PTHR11732:SF294 ALDO-KETO REDUCTASE FAMILY 1 MEMBER B1 11 228 6.1E-78
3 g12728.t24 PANTHER PTHR11732 ALDO/KETO REDUCTASE 11 228 6.1E-78
12 g12728.t24 PIRSF PIRSF000097 AKR 2 230 1.9E-81
5 g12728.t24 PRINTS PR00069 Aldo-keto reductase signature 11 29 2.1E-43
4 g12728.t24 PRINTS PR00069 Aldo-keto reductase signature 61 78 2.1E-43
7 g12728.t24 PRINTS PR00069 Aldo-keto reductase signature 95 124 2.1E-43
6 g12728.t24 PRINTS PR00069 Aldo-keto reductase signature 142 166 2.1E-43
1 g12728.t24 Pfam PF00248 Aldo/keto reductase family 12 205 4.9E-38
9 g12728.t24 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 61 78 -
10 g12728.t24 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 175 190 -
8 g12728.t24 SUPERFAMILY SSF51430 NAD(P)-linked oxidoreductase 12 225 5.76E-65

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0047834 D-threo-aldose 1-dehydrogenase activity MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed