General information for g12728.t29
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 1,5-anhydro-D-fructose reductase.
Parent gene
- The parent gene g12728 is located on chr_1: 25507881..25508906 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12728 | g12728.t29 | TTS | g12728.t29 | 25507381 | 25507381 |
| chr_1 | g12728 | g12728.t29 | isoform | g12728.t29 | 25507836 | 25508906 |
| chr_1 | g12728 | g12728.t29 | exon | g12728.t29.exon1 | 25507836 | 25508414 |
| chr_1 | g12728 | g12728.t29 | cds | g12728.t29.CDS1 | 25507836 | 25508414 |
| chr_1 | g12728 | g12728.t29 | exon | g12728.t29.exon2 | 25508849 | 25508906 |
| chr_1 | g12728 | g12728.t29 | cds | g12728.t29.CDS2 | 25508849 | 25508878 |
| chr_1 | g12728 | g12728.t29 | TSS | g12728.t29 | 25508972 | 25508972 |
Sequences
>g12728.t29 Gene=g12728 Length=637
ATGGCAGCACCTACTGTTACTCTCAATAATGGCAAACAATTTCCAATCGTTGGCCTTGTC
ACCACCTGGTGTTGTTGCTCAAGCTGTAAAAGACGCAATTGATGCTGGCTATCGTCATTT
TGACGGTGCTCATGTATATGAAAATGAGCATGAAGTTGGTGAAGGAATTAATGCTAAAAT
CGCTGAAGGTGTTATCAAACGTGAAGACGTTTTTGTAACATCAAAATTATGGTGCACTTT
CCATGACCCAAAGGATGTTCGTGGTGCACTCGAGCATACATTGAAACAATTAAATTTAGA
TTATCTTGACTTGTACCTCATGCATTGGCCTATTTGTTATCAAAAATCAACTGAATTGTT
CCCAAAGAATGAAGCTGGTGAAATTTTGCACGCTAATTTTGATATTCTTGACACTTATCG
TGCAATGGAGGAACTTGTTGATGCTGGATTGACTAAAAGTATTGGAATTTCAAACTTCAA
TATCAAACAAGTTGAGTACATTACTAAAAATGCTCGCATCCAACCAGTCACCAATCAAGT
TGAATGCAATCCATATTTACTTAATAAAGAATTAAGTGATTTCTGCAAAAGTAAAAACAT
TGTCATCACCGCTTATTCACCTCTTGGTTCACCAGGT
>g12728.t29 Gene=g12728 Length=203
MANNFQSLALSPPGVVAQAVKDAIDAGYRHFDGAHVYENEHEVGEGINAKIAEGVIKRED
VFVTSKLWCTFHDPKDVRGALEHTLKQLNLDYLDLYLMHWPICYQKSTELFPKNEAGEIL
HANFDILDTYRAMEELVDAGLTKSIGISNFNIKQVEYITKNARIQPVTNQVECNPYLLNK
ELSDFCKSKNIVITAYSPLGSPG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g12728.t29 | Gene3D | G3DSA:3.20.20.100 | - | 5 | 203 | 4.9E-85 |
| 2 | g12728.t29 | PANTHER | PTHR11732:SF294 | ALDO-KETO REDUCTASE FAMILY 1 MEMBER B1 | 10 | 202 | 9.8E-81 |
| 3 | g12728.t29 | PANTHER | PTHR11732 | ALDO/KETO REDUCTASE | 10 | 202 | 9.8E-81 |
| 4 | g12728.t29 | PRINTS | PR00069 | Aldo-keto reductase signature | 23 | 47 | 1.1E-44 |
| 7 | g12728.t29 | PRINTS | PR00069 | Aldo-keto reductase signature | 83 | 101 | 1.1E-44 |
| 5 | g12728.t29 | PRINTS | PR00069 | Aldo-keto reductase signature | 133 | 150 | 1.1E-44 |
| 6 | g12728.t29 | PRINTS | PR00069 | Aldo-keto reductase signature | 167 | 196 | 1.1E-44 |
| 1 | g12728.t29 | Pfam | PF00248 | Aldo/keto reductase family | 16 | 201 | 7.8E-42 |
| 10 | g12728.t29 | ProSitePatterns | PS00798 | Aldo/keto reductase family signature 1. | 27 | 44 | - |
| 9 | g12728.t29 | ProSitePatterns | PS00062 | Aldo/keto reductase family signature 2. | 133 | 150 | - |
| 8 | g12728.t29 | SUPERFAMILY | SSF51430 | NAD(P)-linked oxidoreductase | 12 | 202 | 3.93E-67 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047834 | D-threo-aldose 1-dehydrogenase activity | MF |
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed