General information for g12737.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Tyrosine-protein phosphatase 10D.
Parent gene
- The parent gene g12737 is located on chr_1: 25543765..25544730 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12737 | g12737.t1 | isoform | g12737.t1 | 25524434 | 25543765 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon1 | 25524434 | 25524699 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS1 | 25524434 | 25524699 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon2 | 25525181 | 25525306 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS2 | 25525181 | 25525306 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon3 | 25525375 | 25525484 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS3 | 25525375 | 25525484 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon4 | 25525545 | 25525693 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS4 | 25525545 | 25525693 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon5 | 25525760 | 25525874 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS5 | 25525760 | 25525874 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon6 | 25525937 | 25526266 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS6 | 25525937 | 25526266 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon7 | 25526346 | 25526580 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS7 | 25526346 | 25526580 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon8 | 25526947 | 25528383 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS8 | 25526947 | 25528383 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon9 | 25528449 | 25528880 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS9 | 25528449 | 25528880 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon10 | 25528945 | 25529520 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS10 | 25528945 | 25529520 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon11 | 25529590 | 25530114 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS11 | 25529590 | 25530114 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon12 | 25530263 | 25530307 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS12 | 25530263 | 25530307 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon13 | 25530918 | 25531001 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS13 | 25530918 | 25531001 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon14 | 25531097 | 25531381 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS14 | 25531097 | 25531381 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon15 | 25531555 | 25531801 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS15 | 25531555 | 25531801 |
| chr_1 | g12737 | g12737.t1 | exon | g12737.t1.exon16 | 25543679 | 25543765 |
| chr_1 | g12737 | g12737.t1 | cds | g12737.t1.CDS16 | 25543679 | 25543765 |
| chr_1 | g12737 | g12737.t1 | TSS | g12737.t1 | 25544730 | 25544730 |
| chr_1 | g12737 | g12737.t1 | TTS | g12737.t1 | NA | NA |
Sequences
>g12737.t1 Gene=g12737 Length=5049
ATGGCAGCAATGAAACCGACTTTCAATGGATATTATTCAACAGTTATTAAAATTTTACAT
TTATGGATTTTACTCATTAACATACAGACCTCCTCAAGTGCCGATCTCGTGATAGAAATT
CCAGGCAATAATGGTCAAGACGATTCGTTCTATCGTCTCGATTATTATCCACCATTTGGA
TCACCCGAGCCCAATACAACAATTCCATCTCGCGATATTGGCGATGAAATTCAATTCTCA
AATGCGCTTCCTGGTACAAAATACAGCTTCTGGCTTTATTACACAAATGCCACACATCAC
GATTGGCTTACGTGGACAGTGTCAATTACAACTGCACCCGATCCGCCATCAAATCTTTCA
GTCTCGGTACAGAGTGGAAAGATGGCTACAATACAATGGAGTCCACCTTTGCAGGGAAAT
TTTTCATCTTTTAAACTTAGAATTTTAAGCTTATCGGACCAACAAAATTCATACATTAAT
CGCACCATATCAGTCACAGACGACTCATTTAAACATGTGTTAAAAGATCTGACGCCTGGC
GTCACATATCAAATTCAAGCATACACACTTTTTGATGGGAAAGAATCAGTTGCTTACACG
AGTCGTAATTTTACTACAATTTCTAACATAGATTGCTCGCAATTAACAAATATTAGCGAG
GAGCTTTGTCAAAATCAAAAAGAGCACTTTGAGGTGGTTTATGAGCGGCTTAGGCACAAA
GATTTGTTGGATATAAGATACTTGAGAGAGCCAAACACGCCAGGAAAGTTCATTGTATGG
TTCCGTAACGAGACGACACTTTTGGTGCTTTGGCAGCCGCCTTATCCTGCGGGCATTTAC
ACGCATTATAAAGTTTCAATCGATCCGGCTGATGCCATTGAAAGTGTGTTGTATGTAGAA
AAAGAAGGTGAACCACCAGGCCCAGCACAAGCTGCATTTAAAGGTCTCATTCCCGGCCGA
GCTTATAACATATCAGTACAGACAATGTCAGAAGATGAAATTTCTCTTCCAACAACTGCA
CAATATCGAACTGTTCCATTGCGACCATTAAATGTGACTTTTGATCGAGACTCGATAACT
GAGCACTCATTCAAGGCCATTTGGGAGCCACCACGTGGACTGAGTGAATTTGATAAATAT
CAAGTTTCATTGTCAACAACTCAACGTAGACAGCAAGGTGTATCAAAAACCGATGATGGA
CCTGTCTCACTCGAGTTCAAAGACAATCTTGAGCCCGGAAAAACATATCAAGTAGTCGTA
AAAACTGTTTCAGGCAAAGTTACGAGTTGGCCAGCAACAGCAGATGTGACACTTAAGCCA
TTACCGGTCAAAAACCTTGAAGTTGTTGATGAGTCTAATGGTGTTGTCACGATAATGTGG
ACTCCGGATGAACAGAGTACACAGGATGAATATCGAATTAGTTATCATGAAGTTGATGGA
AATTCGAATGGCGATTCAAGCACAATGAATACAGAATCTATTCGGTATACACTCGAGAAT
TTGTTGCCAGGACGAAATTATTCTATTACTGTGCAGGCTATATCAAAGAAAATGGAATCG
AATGAAACAACTATTTATATTTCAACACGTCCATCAGCGCCCATTATTGAGGATTTGAAA
TCGATTCGTGAAGGTCTTAATATCAGTTGGAAGAGTGATGTAAATTCGAAACAAGAGCAA
TATGAAGTCACTTACACGCGTAATGAAACCGGCGAAACAAAAACCGTGTTGACAAAGGAC
ACGAGACTTGTTTTCAAACCGCTATATCCAGGTGCTGGATATATTGTGAAAGTATTTGCT
CTCAGTAATGGCCTACGAAGTGAACCGCATGAATATTTTCAGGCAGTTTATCCAAATCCA
CCGCGCAACATGACGATAGAGAAAGTAACGAGCAATTCCGTGCTGGTTCATTGGCTACCG
CCTGAAAATTCAATATTCACTGAATATTCAATTCGATATCGCACTGAGAGTGACAAACAA
TGGGTGCGATTACCTTCAGTCAATTCTACCGAGGCCGATGTTACTGACATGACGCCTGGT
GAAAAATACACTATTCAAGTAAATACGGCAAGCTATGGAGTCGAAAGCCCCAATCCTCAA
CAATTTAATCAAACTGTTCGTCCCAATGCAGTTTCTAATGTTGAGCCTGTAGTTGATTCA
AGTAATATTACATTGGAATGGGCAAGACCAGAAGGAAGAGTTGAAACTTATATTATAAAT
TGGTGGCCAACTGACCAACCTGATCAAATTCATACAAAAAATGTTTCCGAACAAAATATT
TCACCAATAATTCATAATGATAAAAATGGTGAAGTTAAAGAAGAGCATCCAATCGTTCAA
GTTCTTATCGACGAATTAATGTCTGGCTTCCAATACAGTTTTACAATTCAGGTCACTAGC
TATAATCTCATAAGTGAAATAACAAAGCTTCAAGTTCGCACTAGACCAATAATCCAATCA
GATATTTTTATCATCAATGGATTAGAAGAGGAAAAAAATTCAATGACAATAACTTATACT
TCGACACCTCGTGATGAGCGTGTTAAATTTGATCATTATCGCTTTTCAATTGGTGATCCA
ACTATTCAAGATAAAGAAAAAGCAGCTGATGATGAGAATCATAAAGTTTCATTCTCTGGC
CTTGTGCCAGGTCGTCTTTATAACATAAAAATGTGGACAGTAAGCGGAGATGTTGCAAGT
CATCCAATTCAACGTCACGATCGCCTGCATCCCGAACCAATTACAATGCTAAATGCCACT
AAAATAACTGACACTGAAATTGTTCTCGCGTGGGATAAACCTGCTGGCGAATACAATGCT
TTTGAAGTTCAATATTTAGTTGATGATCGCTACATTCAAAATTTAACCACTGAACTTAAC
ATCACAATAAATAATCTCAAACCTCATCGTAATTATACATTTACTGTTGTCGTACGTTCT
GGAACGGAAGCAAGTGTATTGAAAAATAGCGCACCCGTTTCTGCCATTTTTACAACACTC
GAATCATTGCCTGGTCGTGTTCACAAATTTACACCAAGTGATATTCAACCTGGTGAGATA
AGCTTCGAATGGAGCTTGCCAGCAGCTGAACAAAATGGTGTTATTCGCCAATATTCAATT
TCTTATGGACTTGAAAATGGACCACAATCACATGTCAAAAATTATGCACCTACTGAACAT
CGTGGAACTGTTCGTAATCTCATTCCAGGCAGCACATATGTTTTTAAAATTCAAGCAAAA
ACAGCTATTGGTTATGGACCAGAAACAATTTGGAAACAAAAAATGCCAATTTGGGCACCG
CCAAAACCAGCCAATCAAGTTGTCCCAACTGAAGTTCATCGCAGTTCAAATTCAATACAA
ATTCGATTCCGTAAAAATTATTTCTTGGACACCAATGGTGCAGTTATTATGTACACAATT
ATTGTAGCAGAGGATGATAGTAAAAATTCATCTGGTTTAGAAATGCCTAGTTGGCATGAT
GTTCAATCTTATTCAATATGGCCACCATATCAAGCTGTTGAGCCATATTATCCATTCAAA
AACAGTTCAATTTTTGTTGAAGATTTCACAATTGGAGCTGAAAATTGTGATAAAAATAGA
CAGAAAGGCTATTGTAATGGACCGTTAAAGTCAGGAACTACTTATAGAGTCAAAATTCGA
GCATTTTCAGCTCCTGATAAATTTACTGATACAGCTTATAGTTTTCCTATTCAAACAGAT
CAAGACAACACATCACTTTTCGTAGCTATTGCTGTGCCATTACTTCTCATTTTTATTCTC
TTCACAACTCTACTATTCTTGCGTCGTCGTCGATTTTTATGTAAGCGTGCAACTGACGCG
AGAGCAAATGACAACATGTCACTTCCCGATAGCACAATGGAAACAAGTCGACCAGTATTA
ATTAAGAACTTTGCCGAGCATTATCGCATGATGTCTGCAGATTCTGATTTTAGATTTAGT
GAAGAATTCGAGGAGTTGAAGCATGTTGGTCGCGATCAGCCCTGTACTTTTGCAGATTTG
CCATGTAATCGACCCAAAAATCGTTTCACAAACATTCTTCCATACGACCATTCGCGATTT
AAACTGCAACCTGTTGATGATGATGAGGGTAGCGACTATATCAACGCAAACTACGTTCCA
GGCCATAATTCACCAAGAGAATTTATTGTTACGCAAGGTCCACTTCATTCAACACGCGAT
GATTTCTGGCGTATGTGCTGGGAAAGTAATTCAAAAGCCATAGTCATGTTGACTCGATGT
TATGAGAAAGGCAGAGAGAAATGTGATCATTATTGGCCAATGGATACAGTGCCAGTATAT
TATGGAGATATTAAAGTCACACTTCTCAATGAAAGCCATTATCCAGACTGGCTAATCACT
GAATTTATGATGCAAAGGGGTGATCAACAACGTGTTATGAGACACTTCCATTTCTCAACA
TGGCCAGATTTTGGTGTGCCAAATCCACCTCAAACTCTTGCACGCTTCGTTCGAGCATTC
CGTGAAAGAATAGGACCAGATACTCGGCCCCTTGTTGTTCATTGCAGTGCTGGTGTGGGC
AGAAGTGGAACATTCATTTGTCTAGACAGGATATTGCAACAGATACAAGTATCTGACTAT
GTCGATATTTTTGGTATTGTATATAGTATGAGAAAAGAACGAGTGTGGATGGTACAAACA
GAACAACAATATATTTGCATTCATCAGTGCTTAATGGCTGTGTTAGAGGGCAAAGAAAAT
GCGGGACCGCCACGTGAAATTCACGATAATCAGGGCTACGAGGAACAAAATAAAGCATCA
GAAGATACAGCAGAGATAAAAATAATAATCGACAATATCGATGAGAAGAAAGAAAATGAA
ATTGAAGAAGATGAAGGAATTGATGAGTTTGATGATGAAGAGAAGGCACTTGTTGAGAAT
GAGCCAACAAATGATGATGATACGACTCATGAGACAACGACCAATACAAATACAACGACT
GAAAATACTGCCACAACACTCATCAATGACAGTGATCCACTTGGAAATCCATGGAAAGAG
GAAAGATGA
>g12737.t1 Gene=g12737 Length=1682
MAAMKPTFNGYYSTVIKILHLWILLINIQTSSSADLVIEIPGNNGQDDSFYRLDYYPPFG
SPEPNTTIPSRDIGDEIQFSNALPGTKYSFWLYYTNATHHDWLTWTVSITTAPDPPSNLS
VSVQSGKMATIQWSPPLQGNFSSFKLRILSLSDQQNSYINRTISVTDDSFKHVLKDLTPG
VTYQIQAYTLFDGKESVAYTSRNFTTISNIDCSQLTNISEELCQNQKEHFEVVYERLRHK
DLLDIRYLREPNTPGKFIVWFRNETTLLVLWQPPYPAGIYTHYKVSIDPADAIESVLYVE
KEGEPPGPAQAAFKGLIPGRAYNISVQTMSEDEISLPTTAQYRTVPLRPLNVTFDRDSIT
EHSFKAIWEPPRGLSEFDKYQVSLSTTQRRQQGVSKTDDGPVSLEFKDNLEPGKTYQVVV
KTVSGKVTSWPATADVTLKPLPVKNLEVVDESNGVVTIMWTPDEQSTQDEYRISYHEVDG
NSNGDSSTMNTESIRYTLENLLPGRNYSITVQAISKKMESNETTIYISTRPSAPIIEDLK
SIREGLNISWKSDVNSKQEQYEVTYTRNETGETKTVLTKDTRLVFKPLYPGAGYIVKVFA
LSNGLRSEPHEYFQAVYPNPPRNMTIEKVTSNSVLVHWLPPENSIFTEYSIRYRTESDKQ
WVRLPSVNSTEADVTDMTPGEKYTIQVNTASYGVESPNPQQFNQTVRPNAVSNVEPVVDS
SNITLEWARPEGRVETYIINWWPTDQPDQIHTKNVSEQNISPIIHNDKNGEVKEEHPIVQ
VLIDELMSGFQYSFTIQVTSYNLISEITKLQVRTRPIIQSDIFIINGLEEEKNSMTITYT
STPRDERVKFDHYRFSIGDPTIQDKEKAADDENHKVSFSGLVPGRLYNIKMWTVSGDVAS
HPIQRHDRLHPEPITMLNATKITDTEIVLAWDKPAGEYNAFEVQYLVDDRYIQNLTTELN
ITINNLKPHRNYTFTVVVRSGTEASVLKNSAPVSAIFTTLESLPGRVHKFTPSDIQPGEI
SFEWSLPAAEQNGVIRQYSISYGLENGPQSHVKNYAPTEHRGTVRNLIPGSTYVFKIQAK
TAIGYGPETIWKQKMPIWAPPKPANQVVPTEVHRSSNSIQIRFRKNYFLDTNGAVIMYTI
IVAEDDSKNSSGLEMPSWHDVQSYSIWPPYQAVEPYYPFKNSSIFVEDFTIGAENCDKNR
QKGYCNGPLKSGTTYRVKIRAFSAPDKFTDTAYSFPIQTDQDNTSLFVAIAVPLLLIFIL
FTTLLFLRRRRFLCKRATDARANDNMSLPDSTMETSRPVLIKNFAEHYRMMSADSDFRFS
EEFEELKHVGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQPVDDDEGSDYINANYVP
GHNSPREFIVTQGPLHSTRDDFWRMCWESNSKAIVMLTRCYEKGREKCDHYWPMDTVPVY
YGDIKVTLLNESHYPDWLITEFMMQRGDQQRVMRHFHFSTWPDFGVPNPPQTLARFVRAF
RERIGPDTRPLVVHCSAGVGRSGTFICLDRILQQIQVSDYVDIFGIVYSMRKERVWMVQT
EQQYICIHQCLMAVLEGKENAGPPREIHDNQGYEEQNKASEDTAEIKIIIDNIDEKKENE
IEEDEGIDEFDDEEKALVENEPTNDDDTTHETTTNTNTTTENTATTLINDSDPLGNPWKE
ER
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 49 | g12737.t1 | CDD | cd00063 | FN3 | 113 | 206 | 8.72494E-9 |
| 52 | g12737.t1 | CDD | cd00063 | FN3 | 251 | 339 | 7.04637E-6 |
| 53 | g12737.t1 | CDD | cd00063 | FN3 | 346 | 433 | 2.14715E-4 |
| 47 | g12737.t1 | CDD | cd00063 | FN3 | 440 | 524 | 4.95985E-10 |
| 51 | g12737.t1 | CDD | cd00063 | FN3 | 531 | 609 | 5.74741E-5 |
| 46 | g12737.t1 | CDD | cd00063 | FN3 | 618 | 697 | 3.59618E-14 |
| 50 | g12737.t1 | CDD | cd00063 | FN3 | 911 | 985 | 1.8502E-6 |
| 48 | g12737.t1 | CDD | cd00063 | FN3 | 1004 | 1089 | 2.43403E-10 |
| 45 | g12737.t1 | CDD | cd14548 | R3-PTPc | 1348 | 1569 | 2.07527E-143 |
| 34 | g12737.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 105 | 209 | 1.6E-12 |
| 33 | g12737.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 249 | 344 | 4.5E-8 |
| 31 | g12737.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 346 | 439 | 8.1E-10 |
| 27 | g12737.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 440 | 534 | 1.4E-15 |
| 35 | g12737.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 535 | 615 | 7.1E-6 |
| 36 | g12737.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 616 | 707 | 2.0E-15 |
| 29 | g12737.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 710 | 815 | 1.4E-6 |
| 30 | g12737.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 828 | 910 | 1.5E-5 |
| 32 | g12737.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 911 | 993 | 2.6E-10 |
| 28 | g12737.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 994 | 1096 | 3.8E-16 |
| 37 | g12737.t1 | Gene3D | G3DSA:3.90.190.10 | Protein tyrosine phosphatase superfamily | 1295 | 1580 | 4.6E-113 |
| 70 | g12737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1616 | 1682 | - |
| 71 | g12737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1617 | 1640 | - |
| 69 | g12737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1649 | 1672 | - |
| 10 | g12737.t1 | PANTHER | PTHR46957 | CYTOKINE RECEPTOR | 64 | 225 | 1.5E-266 |
| 11 | g12737.t1 | PANTHER | PTHR46957 | CYTOKINE RECEPTOR | 160 | 1580 | 1.5E-266 |
| 17 | g12737.t1 | PRINTS | PR00700 | Protein tyrosine phosphatase signature | 1372 | 1379 | 3.1E-34 |
| 12 | g12737.t1 | PRINTS | PR00700 | Protein tyrosine phosphatase signature | 1388 | 1408 | 3.1E-34 |
| 16 | g12737.t1 | PRINTS | PR00700 | Protein tyrosine phosphatase signature | 1471 | 1488 | 3.1E-34 |
| 14 | g12737.t1 | PRINTS | PR00700 | Protein tyrosine phosphatase signature | 1510 | 1528 | 3.1E-34 |
| 15 | g12737.t1 | PRINTS | PR00700 | Protein tyrosine phosphatase signature | 1541 | 1556 | 3.1E-34 |
| 13 | g12737.t1 | PRINTS | PR00700 | Protein tyrosine phosphatase signature | 1557 | 1567 | 3.1E-34 |
| 9 | g12737.t1 | Pfam | PF00041 | Fibronectin type III domain | 114 | 190 | 2.2E-9 |
| 5 | g12737.t1 | Pfam | PF00041 | Fibronectin type III domain | 254 | 332 | 9.1E-9 |
| 8 | g12737.t1 | Pfam | PF00041 | Fibronectin type III domain | 349 | 426 | 1.3E-7 |
| 7 | g12737.t1 | Pfam | PF00041 | Fibronectin type III domain | 442 | 520 | 5.8E-13 |
| 4 | g12737.t1 | Pfam | PF00041 | Fibronectin type III domain | 620 | 693 | 6.8E-15 |
| 3 | g12737.t1 | Pfam | PF00041 | Fibronectin type III domain | 913 | 982 | 4.9E-9 |
| 6 | g12737.t1 | Pfam | PF00041 | Fibronectin type III domain | 1007 | 1088 | 5.5E-13 |
| 2 | g12737.t1 | Pfam | PF18861 | Transmembrane domain of protein tyrosine phosphatase, receptor type J | 1124 | 1269 | 2.3E-16 |
| 1 | g12737.t1 | Pfam | PF00102 | Protein-tyrosine phosphatase | 1343 | 1572 | 2.8E-77 |
| 40 | g12737.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 33 | - |
| 41 | g12737.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 17 | - |
| 42 | g12737.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 18 | 26 | - |
| 44 | g12737.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 27 | 33 | - |
| 39 | g12737.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 34 | 1245 | - |
| 43 | g12737.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1246 | 1267 | - |
| 38 | g12737.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1268 | 1682 | - |
| 68 | g12737.t1 | ProSitePatterns | PS00383 | Tyrosine specific protein phosphatases active site. | 1513 | 1523 | - |
| 76 | g12737.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 17 | 114 | 9.925 |
| 79 | g12737.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 115 | 209 | 15.44 |
| 74 | g12737.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 253 | 348 | 14.407 |
| 81 | g12737.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 350 | 441 | 9.137 |
| 78 | g12737.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 442 | 533 | 17.215 |
| 80 | g12737.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 534 | 619 | 7.653 |
| 82 | g12737.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 620 | 709 | 19.306 |
| 73 | g12737.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 710 | 817 | 7.732 |
| 75 | g12737.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 910 | 1002 | 12.316 |
| 77 | g12737.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 1003 | 1102 | 16.639 |
| 83 | g12737.t1 | ProSiteProfiles | PS50055 | PTP type protein phosphatase family profile. | 1319 | 1574 | 55.417 |
| 72 | g12737.t1 | ProSiteProfiles | PS50056 | Tyrosine specific protein phosphatases family profile. | 1491 | 1565 | 19.786 |
| 58 | g12737.t1 | SMART | SM00060 | FN3_2 | 113 | 196 | 2.1E-7 |
| 64 | g12737.t1 | SMART | SM00060 | FN3_2 | 251 | 335 | 4.8E-5 |
| 61 | g12737.t1 | SMART | SM00060 | FN3_2 | 346 | 429 | 0.017 |
| 55 | g12737.t1 | SMART | SM00060 | FN3_2 | 440 | 520 | 9.4E-11 |
| 60 | g12737.t1 | SMART | SM00060 | FN3_2 | 531 | 607 | 0.25 |
| 65 | g12737.t1 | SMART | SM00060 | FN3_2 | 618 | 695 | 2.8E-9 |
| 59 | g12737.t1 | SMART | SM00060 | FN3_2 | 708 | 805 | 0.0055 |
| 57 | g12737.t1 | SMART | SM00060 | FN3_2 | 816 | 900 | 15.0 |
| 62 | g12737.t1 | SMART | SM00060 | FN3_2 | 911 | 985 | 9.0E-8 |
| 63 | g12737.t1 | SMART | SM00060 | FN3_2 | 1004 | 1086 | 4.4E-7 |
| 56 | g12737.t1 | SMART | SM00060 | FN3_2 | 1100 | 1229 | 0.86 |
| 67 | g12737.t1 | SMART | SM00194 | PTPc_3 | 1318 | 1576 | 5.4E-127 |
| 66 | g12737.t1 | SMART | SM00404 | ptp_7 | 1472 | 1573 | 3.0E-40 |
| 21 | g12737.t1 | SUPERFAMILY | SSF49265 | Fibronectin type III | 50 | 121 | 5.7E-5 |
| 20 | g12737.t1 | SUPERFAMILY | SSF49265 | Fibronectin type III | 110 | 203 | 7.38E-14 |
| 24 | g12737.t1 | SUPERFAMILY | SSF49265 | Fibronectin type III | 251 | 430 | 9.53E-14 |
| 18 | g12737.t1 | SUPERFAMILY | SSF49265 | Fibronectin type III | 440 | 613 | 1.98E-18 |
| 22 | g12737.t1 | SUPERFAMILY | SSF49265 | Fibronectin type III | 616 | 697 | 2.8E-17 |
| 19 | g12737.t1 | SUPERFAMILY | SSF49265 | Fibronectin type III | 714 | 895 | 3.44E-7 |
| 23 | g12737.t1 | SUPERFAMILY | SSF49265 | Fibronectin type III | 911 | 1093 | 6.63E-27 |
| 25 | g12737.t1 | SUPERFAMILY | SSF52799 | (Phosphotyrosine protein) phosphatases II | 1297 | 1573 | 4.9E-101 |
| 26 | g12737.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 33 | - |
| 54 | g12737.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1245 | 1267 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0006470 | protein dephosphorylation | BP |
| GO:0016311 | dephosphorylation | BP |
| GO:0004725 | protein tyrosine phosphatase activity | MF |
| GO:0016791 | phosphatase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05694 (receptor-type tyrosine-protein phosphatase beta)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
