Gene loci information

Transcript annotation

  • This transcript has been annotated as Tyrosine-protein phosphatase 10D.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12737 g12737.t2 isoform g12737.t2 25524434 25543765
chr_1 g12737 g12737.t2 exon g12737.t2.exon1 25524434 25524699
chr_1 g12737 g12737.t2 cds g12737.t2.CDS1 25524434 25524699
chr_1 g12737 g12737.t2 exon g12737.t2.exon2 25525181 25525306
chr_1 g12737 g12737.t2 cds g12737.t2.CDS2 25525181 25525306
chr_1 g12737 g12737.t2 exon g12737.t2.exon3 25525375 25525484
chr_1 g12737 g12737.t2 cds g12737.t2.CDS3 25525375 25525484
chr_1 g12737 g12737.t2 exon g12737.t2.exon4 25525545 25525693
chr_1 g12737 g12737.t2 cds g12737.t2.CDS4 25525545 25525693
chr_1 g12737 g12737.t2 exon g12737.t2.exon5 25525760 25525874
chr_1 g12737 g12737.t2 cds g12737.t2.CDS5 25525760 25525874
chr_1 g12737 g12737.t2 exon g12737.t2.exon6 25525937 25526266
chr_1 g12737 g12737.t2 cds g12737.t2.CDS6 25525937 25526266
chr_1 g12737 g12737.t2 exon g12737.t2.exon7 25526346 25526580
chr_1 g12737 g12737.t2 cds g12737.t2.CDS7 25526346 25526580
chr_1 g12737 g12737.t2 exon g12737.t2.exon8 25526947 25528383
chr_1 g12737 g12737.t2 cds g12737.t2.CDS8 25526947 25528383
chr_1 g12737 g12737.t2 exon g12737.t2.exon9 25528449 25528880
chr_1 g12737 g12737.t2 cds g12737.t2.CDS9 25528449 25528880
chr_1 g12737 g12737.t2 exon g12737.t2.exon10 25528945 25529520
chr_1 g12737 g12737.t2 cds g12737.t2.CDS10 25528945 25529520
chr_1 g12737 g12737.t2 exon g12737.t2.exon11 25529590 25530114
chr_1 g12737 g12737.t2 cds g12737.t2.CDS11 25529590 25530114
chr_1 g12737 g12737.t2 exon g12737.t2.exon12 25531097 25531381
chr_1 g12737 g12737.t2 cds g12737.t2.CDS12 25531097 25531381
chr_1 g12737 g12737.t2 exon g12737.t2.exon13 25531555 25531801
chr_1 g12737 g12737.t2 cds g12737.t2.CDS13 25531555 25531801
chr_1 g12737 g12737.t2 exon g12737.t2.exon14 25543679 25543765
chr_1 g12737 g12737.t2 cds g12737.t2.CDS14 25543679 25543765
chr_1 g12737 g12737.t2 TSS g12737.t2 25544730 25544730
chr_1 g12737 g12737.t2 TTS g12737.t2 NA NA

Sequences

>g12737.t2 Gene=g12737 Length=4920
ATGGCAGCAATGAAACCGACTTTCAATGGATATTATTCAACAGTTATTAAAATTTTACAT
TTATGGATTTTACTCATTAACATACAGACCTCCTCAAGTGCCGATCTCGTGATAGAAATT
CCAGGCAATAATGGTCAAGACGATTCGTTCTATCGTCTCGATTATTATCCACCATTTGGA
TCACCCGAGCCCAATACAACAATTCCATCTCGCGATATTGGCGATGAAATTCAATTCTCA
AATGCGCTTCCTGGTACAAAATACAGCTTCTGGCTTTATTACACAAATGCCACACATCAC
GATTGGCTTACGTGGACAGTGTCAATTACAACTGCACCCGATCCGCCATCAAATCTTTCA
GTCTCGGTACAGAGTGGAAAGATGGCTACAATACAATGGAGTCCACCTTTGCAGGGAAAT
TTTTCATCTTTTAAACTTAGAATTTTAAGCTTATCGGACCAACAAAATTCATACATTAAT
CGCACCATATCAGTCACAGACGACTCATTTAAACATGTGTTAAAAGATCTGACGCCTGGC
GTCACATATCAAATTCAAGCATACACACTTTTTGATGGGAAAGAATCAGTTGCTTACACG
AGTCGTAATTTTACTACAAAGCCAAACACGCCAGGAAAGTTCATTGTATGGTTCCGTAAC
GAGACGACACTTTTGGTGCTTTGGCAGCCGCCTTATCCTGCGGGCATTTACACGCATTAT
AAAGTTTCAATCGATCCGGCTGATGCCATTGAAAGTGTGTTGTATGTAGAAAAAGAAGGT
GAACCACCAGGCCCAGCACAAGCTGCATTTAAAGGTCTCATTCCCGGCCGAGCTTATAAC
ATATCAGTACAGACAATGTCAGAAGATGAAATTTCTCTTCCAACAACTGCACAATATCGA
ACTGTTCCATTGCGACCATTAAATGTGACTTTTGATCGAGACTCGATAACTGAGCACTCA
TTCAAGGCCATTTGGGAGCCACCACGTGGACTGAGTGAATTTGATAAATATCAAGTTTCA
TTGTCAACAACTCAACGTAGACAGCAAGGTGTATCAAAAACCGATGATGGACCTGTCTCA
CTCGAGTTCAAAGACAATCTTGAGCCCGGAAAAACATATCAAGTAGTCGTAAAAACTGTT
TCAGGCAAAGTTACGAGTTGGCCAGCAACAGCAGATGTGACACTTAAGCCATTACCGGTC
AAAAACCTTGAAGTTGTTGATGAGTCTAATGGTGTTGTCACGATAATGTGGACTCCGGAT
GAACAGAGTACACAGGATGAATATCGAATTAGTTATCATGAAGTTGATGGAAATTCGAAT
GGCGATTCAAGCACAATGAATACAGAATCTATTCGGTATACACTCGAGAATTTGTTGCCA
GGACGAAATTATTCTATTACTGTGCAGGCTATATCAAAGAAAATGGAATCGAATGAAACA
ACTATTTATATTTCAACACGTCCATCAGCGCCCATTATTGAGGATTTGAAATCGATTCGT
GAAGGTCTTAATATCAGTTGGAAGAGTGATGTAAATTCGAAACAAGAGCAATATGAAGTC
ACTTACACGCGTAATGAAACCGGCGAAACAAAAACCGTGTTGACAAAGGACACGAGACTT
GTTTTCAAACCGCTATATCCAGGTGCTGGATATATTGTGAAAGTATTTGCTCTCAGTAAT
GGCCTACGAAGTGAACCGCATGAATATTTTCAGGCAGTTTATCCAAATCCACCGCGCAAC
ATGACGATAGAGAAAGTAACGAGCAATTCCGTGCTGGTTCATTGGCTACCGCCTGAAAAT
TCAATATTCACTGAATATTCAATTCGATATCGCACTGAGAGTGACAAACAATGGGTGCGA
TTACCTTCAGTCAATTCTACCGAGGCCGATGTTACTGACATGACGCCTGGTGAAAAATAC
ACTATTCAAGTAAATACGGCAAGCTATGGAGTCGAAAGCCCCAATCCTCAACAATTTAAT
CAAACTGTTCGTCCCAATGCAGTTTCTAATGTTGAGCCTGTAGTTGATTCAAGTAATATT
ACATTGGAATGGGCAAGACCAGAAGGAAGAGTTGAAACTTATATTATAAATTGGTGGCCA
ACTGACCAACCTGATCAAATTCATACAAAAAATGTTTCCGAACAAAATATTTCACCAATA
ATTCATAATGATAAAAATGGTGAAGTTAAAGAAGAGCATCCAATCGTTCAAGTTCTTATC
GACGAATTAATGTCTGGCTTCCAATACAGTTTTACAATTCAGGTCACTAGCTATAATCTC
ATAAGTGAAATAACAAAGCTTCAAGTTCGCACTAGACCAATAATCCAATCAGATATTTTT
ATCATCAATGGATTAGAAGAGGAAAAAAATTCAATGACAATAACTTATACTTCGACACCT
CGTGATGAGCGTGTTAAATTTGATCATTATCGCTTTTCAATTGGTGATCCAACTATTCAA
GATAAAGAAAAAGCAGCTGATGATGAGAATCATAAAGTTTCATTCTCTGGCCTTGTGCCA
GGTCGTCTTTATAACATAAAAATGTGGACAGTAAGCGGAGATGTTGCAAGTCATCCAATT
CAACGTCACGATCGCCTGCATCCCGAACCAATTACAATGCTAAATGCCACTAAAATAACT
GACACTGAAATTGTTCTCGCGTGGGATAAACCTGCTGGCGAATACAATGCTTTTGAAGTT
CAATATTTAGTTGATGATCGCTACATTCAAAATTTAACCACTGAACTTAACATCACAATA
AATAATCTCAAACCTCATCGTAATTATACATTTACTGTTGTCGTACGTTCTGGAACGGAA
GCAAGTGTATTGAAAAATAGCGCACCCGTTTCTGCCATTTTTACAACACTCGAATCATTG
CCTGGTCGTGTTCACAAATTTACACCAAGTGATATTCAACCTGGTGAGATAAGCTTCGAA
TGGAGCTTGCCAGCAGCTGAACAAAATGGTGTTATTCGCCAATATTCAATTTCTTATGGA
CTTGAAAATGGACCACAATCACATGTCAAAAATTATGCACCTACTGAACATCGTGGAACT
GTTCGTAATCTCATTCCAGGCAGCACATATGTTTTTAAAATTCAAGCAAAAACAGCTATT
GGTTATGGACCAGAAACAATTTGGAAACAAAAAATGCCAATTTGGGCACCGCCAAAACCA
GCCAATCAAGTTGTCCCAACTGAAGTTCATCGCAGTTCAAATTCAATACAAATTCGATTC
CGTAAAAATTATTTCTTGGACACCAATGGTGCAGTTATTATGTACACAATTATTGTAGCA
GAGGATGATAGTAAAAATTCATCTGGTTTAGAAATGCCTAGTTGGCATGATGTTCAATCT
TATTCAATATGGCCACCATATCAAGCTGTTGAGCCATATTATCCATTCAAAAACAGTTCA
ATTTTTGTTGAAGATTTCACAATTGGAGCTGAAAATTGTGATAAAAATAGACAGAAAGGC
TATTGTAATGGACCGTTAAAGTCAGGAACTACTTATAGAGTCAAAATTCGAGCATTTTCA
GCTCCTGATAAATTTACTGATACAGCTTATAGTTTTCCTATTCAAACAGATCAAGACAAC
ACATCACTTTTCGTAGCTATTGCTGTGCCATTACTTCTCATTTTTATTCTCTTCACAACT
CTACTATTCTTGCGTCGTCGTCGATTTTTATGTAAGCGTGCAACTGACGCGAGAGCAAAT
GACAACATGTCACTTCCCGATAGCACAATGGAAACAAGTCGACCAGTATTAATTAAGAAC
TTTGCCGAGCATTATCGCATGATGTCTGCAGATTCTGATTTTAGATTTAGTGAAGAATTC
GAGGAGTTGAAGCATGTTGGTCGCGATCAGCCCTGTACTTTTGCAGATTTGCCATGTAAT
CGACCCAAAAATCGTTTCACAAACATTCTTCCATACGACCATTCGCGATTTAAACTGCAA
CCTGTTGATGATGATGAGGGTAGCGACTATATCAACGCAAACTACGTTCCAGGCCATAAT
TCACCAAGAGAATTTATTGTTACGCAAGGTCCACTTCATTCAACACGCGATGATTTCTGG
CGTATGTGCTGGGAAAGTAATTCAAAAGCCATAGTCATGTTGACTCGATGTTATGAGAAA
GGCAGAGAGAAATGTGATCATTATTGGCCAATGGATACAGTGCCAGTATATTATGGAGAT
ATTAAAGTCACACTTCTCAATGAAAGCCATTATCCAGACTGGCTAATCACTGAATTTATG
ATGCAAAGGGGTGATCAACAACGTGTTATGAGACACTTCCATTTCTCAACATGGCCAGAT
TTTGGTGTGCCAAATCCACCTCAAACTCTTGCACGCTTCGTTCGAGCATTCCGTGAAAGA
ATAGGACCAGATACTCGGCCCCTTGTTGTTCATTGCAGTGCTGGTGTGGGCAGAAGTGGA
ACATTCATTTGTCTAGACAGGATATTGCAACAGATACAAGTATCTGACTATGTCGATATT
TTTGGTATTGTATATAGTATGAGAAAAGAACGAGTGTGGATGGTACAAACAGAACAACAA
TATATTTGCATTCATCAGTGCTTAATGGCTGTGTTAGAGGGCAAAGAAAATGCGGGACCG
CCACGTGAAATTCACGATAATCAGGGCTACGAGGAACAAAATAAAGCATCAGAAGATACA
GCAGAGATAAAAATAATAATCGACAATATCGATGAGAAGAAAGAAAATGAAATTGAAGAA
GATGAAGGAATTGATGAGTTTGATGATGAAGAGAAGGCACTTGTTGAGAATGAGCCAACA
AATGATGATGATACGACTCATGAGACAACGACCAATACAAATACAACGACTGAAAATACT
GCCACAACACTCATCAATGACAGTGATCCACTTGGAAATCCATGGAAAGAGGAAAGATGA

>g12737.t2 Gene=g12737 Length=1639
MAAMKPTFNGYYSTVIKILHLWILLINIQTSSSADLVIEIPGNNGQDDSFYRLDYYPPFG
SPEPNTTIPSRDIGDEIQFSNALPGTKYSFWLYYTNATHHDWLTWTVSITTAPDPPSNLS
VSVQSGKMATIQWSPPLQGNFSSFKLRILSLSDQQNSYINRTISVTDDSFKHVLKDLTPG
VTYQIQAYTLFDGKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPPYPAGIYTHY
KVSIDPADAIESVLYVEKEGEPPGPAQAAFKGLIPGRAYNISVQTMSEDEISLPTTAQYR
TVPLRPLNVTFDRDSITEHSFKAIWEPPRGLSEFDKYQVSLSTTQRRQQGVSKTDDGPVS
LEFKDNLEPGKTYQVVVKTVSGKVTSWPATADVTLKPLPVKNLEVVDESNGVVTIMWTPD
EQSTQDEYRISYHEVDGNSNGDSSTMNTESIRYTLENLLPGRNYSITVQAISKKMESNET
TIYISTRPSAPIIEDLKSIREGLNISWKSDVNSKQEQYEVTYTRNETGETKTVLTKDTRL
VFKPLYPGAGYIVKVFALSNGLRSEPHEYFQAVYPNPPRNMTIEKVTSNSVLVHWLPPEN
SIFTEYSIRYRTESDKQWVRLPSVNSTEADVTDMTPGEKYTIQVNTASYGVESPNPQQFN
QTVRPNAVSNVEPVVDSSNITLEWARPEGRVETYIINWWPTDQPDQIHTKNVSEQNISPI
IHNDKNGEVKEEHPIVQVLIDELMSGFQYSFTIQVTSYNLISEITKLQVRTRPIIQSDIF
IINGLEEEKNSMTITYTSTPRDERVKFDHYRFSIGDPTIQDKEKAADDENHKVSFSGLVP
GRLYNIKMWTVSGDVASHPIQRHDRLHPEPITMLNATKITDTEIVLAWDKPAGEYNAFEV
QYLVDDRYIQNLTTELNITINNLKPHRNYTFTVVVRSGTEASVLKNSAPVSAIFTTLESL
PGRVHKFTPSDIQPGEISFEWSLPAAEQNGVIRQYSISYGLENGPQSHVKNYAPTEHRGT
VRNLIPGSTYVFKIQAKTAIGYGPETIWKQKMPIWAPPKPANQVVPTEVHRSSNSIQIRF
RKNYFLDTNGAVIMYTIIVAEDDSKNSSGLEMPSWHDVQSYSIWPPYQAVEPYYPFKNSS
IFVEDFTIGAENCDKNRQKGYCNGPLKSGTTYRVKIRAFSAPDKFTDTAYSFPIQTDQDN
TSLFVAIAVPLLLIFILFTTLLFLRRRRFLCKRATDARANDNMSLPDSTMETSRPVLIKN
FAEHYRMMSADSDFRFSEEFEELKHVGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQ
PVDDDEGSDYINANYVPGHNSPREFIVTQGPLHSTRDDFWRMCWESNSKAIVMLTRCYEK
GREKCDHYWPMDTVPVYYGDIKVTLLNESHYPDWLITEFMMQRGDQQRVMRHFHFSTWPD
FGVPNPPQTLARFVRAFRERIGPDTRPLVVHCSAGVGRSGTFICLDRILQQIQVSDYVDI
FGIVYSMRKERVWMVQTEQQYICIHQCLMAVLEGKENAGPPREIHDNQGYEEQNKASEDT
AEIKIIIDNIDEKKENEIEEDEGIDEFDDEEKALVENEPTNDDDTTHETTTNTNTTTENT
ATTLINDSDPLGNPWKEER

Protein features from InterProScan

Transcript Database ID Name Start End E.value
49 g12737.t2 CDD cd00063 FN3 113 206 9.93146E-9
52 g12737.t2 CDD cd00063 FN3 208 296 7.86652E-6
51 g12737.t2 CDD cd00063 FN3 303 390 2.59186E-4
48 g12737.t2 CDD cd00063 FN3 397 481 5.81303E-10
50 g12737.t2 CDD cd00063 FN3 488 566 6.47944E-5
53 g12737.t2 CDD cd00063 FN3 575 654 4.25528E-14
54 g12737.t2 CDD cd00063 FN3 868 942 2.12689E-6
47 g12737.t2 CDD cd00063 FN3 961 1046 2.99522E-10
46 g12737.t2 CDD cd14548 R3-PTPc 1305 1526 1.20736E-143
32 g12737.t2 Gene3D G3DSA:2.60.40.10 Immunoglobulins 104 204 1.9E-12
33 g12737.t2 Gene3D G3DSA:2.60.40.10 Immunoglobulins 205 301 2.4E-8
34 g12737.t2 Gene3D G3DSA:2.60.40.10 Immunoglobulins 303 397 7.8E-10
31 g12737.t2 Gene3D G3DSA:2.60.40.10 Immunoglobulins 398 491 1.3E-15
30 g12737.t2 Gene3D G3DSA:2.60.40.10 Immunoglobulins 492 571 6.8E-6
35 g12737.t2 Gene3D G3DSA:2.60.40.10 Immunoglobulins 572 664 1.8E-15
28 g12737.t2 Gene3D G3DSA:2.60.40.10 Immunoglobulins 667 772 1.3E-6
36 g12737.t2 Gene3D G3DSA:2.60.40.10 Immunoglobulins 785 867 1.4E-5
37 g12737.t2 Gene3D G3DSA:2.60.40.10 Immunoglobulins 868 950 2.5E-10
29 g12737.t2 Gene3D G3DSA:2.60.40.10 Immunoglobulins 951 1053 3.7E-16
38 g12737.t2 Gene3D G3DSA:3.90.190.10 Protein tyrosine phosphatase superfamily 1252 1537 4.4E-113
72 g12737.t2 MobiDBLite mobidb-lite consensus disorder prediction 1573 1639 -
71 g12737.t2 MobiDBLite mobidb-lite consensus disorder prediction 1574 1597 -
70 g12737.t2 MobiDBLite mobidb-lite consensus disorder prediction 1606 1629 -
11 g12737.t2 PANTHER PTHR46957 CYTOKINE RECEPTOR 61 830 5.9E-270
12 g12737.t2 PANTHER PTHR46957 CYTOKINE RECEPTOR 837 1000 5.9E-270
10 g12737.t2 PANTHER PTHR46957 CYTOKINE RECEPTOR 947 1537 5.9E-270
13 g12737.t2 PRINTS PR00700 Protein tyrosine phosphatase signature 1329 1336 2.6E-34
18 g12737.t2 PRINTS PR00700 Protein tyrosine phosphatase signature 1345 1365 2.6E-34
14 g12737.t2 PRINTS PR00700 Protein tyrosine phosphatase signature 1428 1445 2.6E-34
17 g12737.t2 PRINTS PR00700 Protein tyrosine phosphatase signature 1467 1485 2.6E-34
15 g12737.t2 PRINTS PR00700 Protein tyrosine phosphatase signature 1498 1513 2.6E-34
16 g12737.t2 PRINTS PR00700 Protein tyrosine phosphatase signature 1514 1524 2.6E-34
8 g12737.t2 Pfam PF00041 Fibronectin type III domain 114 190 2.1E-9
5 g12737.t2 Pfam PF00041 Fibronectin type III domain 211 289 8.8E-9
7 g12737.t2 Pfam PF00041 Fibronectin type III domain 306 383 1.3E-7
9 g12737.t2 Pfam PF00041 Fibronectin type III domain 399 477 5.6E-13
6 g12737.t2 Pfam PF00041 Fibronectin type III domain 577 650 6.6E-15
4 g12737.t2 Pfam PF00041 Fibronectin type III domain 870 939 4.8E-9
3 g12737.t2 Pfam PF00041 Fibronectin type III domain 964 1045 5.3E-13
2 g12737.t2 Pfam PF18861 Transmembrane domain of protein tyrosine phosphatase, receptor type J 1081 1226 2.2E-16
1 g12737.t2 Pfam PF00102 Protein-tyrosine phosphatase 1300 1529 2.7E-77
41 g12737.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 33 -
42 g12737.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 17 -
43 g12737.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 18 26 -
45 g12737.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 27 33 -
40 g12737.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 34 1202 -
44 g12737.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1203 1224 -
39 g12737.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1225 1639 -
69 g12737.t2 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 1470 1480 -
76 g12737.t2 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 17 114 9.925
83 g12737.t2 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 115 209 16.608
78 g12737.t2 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 210 305 14.407
75 g12737.t2 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 307 398 9.137
77 g12737.t2 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 399 490 17.215
79 g12737.t2 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 491 576 7.653
81 g12737.t2 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 577 666 19.306
80 g12737.t2 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 667 774 7.732
74 g12737.t2 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 867 959 12.316
82 g12737.t2 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 960 1059 16.639
84 g12737.t2 ProSiteProfiles PS50055 PTP type protein phosphatase family profile. 1276 1531 55.417
73 g12737.t2 ProSiteProfiles PS50056 Tyrosine specific protein phosphatases family profile. 1448 1522 19.786
59 g12737.t2 SMART SM00060 FN3_2 113 196 2.1E-7
66 g12737.t2 SMART SM00060 FN3_2 208 292 4.8E-5
61 g12737.t2 SMART SM00060 FN3_2 303 386 0.017
60 g12737.t2 SMART SM00060 FN3_2 397 477 9.4E-11
58 g12737.t2 SMART SM00060 FN3_2 488 564 0.25
57 g12737.t2 SMART SM00060 FN3_2 575 652 2.8E-9
63 g12737.t2 SMART SM00060 FN3_2 665 762 0.0055
62 g12737.t2 SMART SM00060 FN3_2 773 857 15.0
65 g12737.t2 SMART SM00060 FN3_2 868 942 9.0E-8
64 g12737.t2 SMART SM00060 FN3_2 961 1043 4.4E-7
56 g12737.t2 SMART SM00060 FN3_2 1057 1186 0.86
68 g12737.t2 SMART SM00194 PTPc_3 1275 1533 5.4E-127
67 g12737.t2 SMART SM00404 ptp_7 1429 1530 3.0E-40
22 g12737.t2 SUPERFAMILY SSF49265 Fibronectin type III 50 121 5.54E-5
24 g12737.t2 SUPERFAMILY SSF49265 Fibronectin type III 100 212 9.38E-15
19 g12737.t2 SUPERFAMILY SSF49265 Fibronectin type III 207 387 3.97E-14
21 g12737.t2 SUPERFAMILY SSF49265 Fibronectin type III 397 570 1.98E-18
20 g12737.t2 SUPERFAMILY SSF49265 Fibronectin type III 572 654 2.33E-17
25 g12737.t2 SUPERFAMILY SSF49265 Fibronectin type III 671 852 3.44E-7
23 g12737.t2 SUPERFAMILY SSF49265 Fibronectin type III 868 1050 7.11E-27
26 g12737.t2 SUPERFAMILY SSF52799 (Phosphotyrosine protein) phosphatases II 1254 1530 4.63E-101
27 g12737.t2 SignalP_EUK SignalP-noTM SignalP-noTM 1 33 -
55 g12737.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1202 1224 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0006470 protein dephosphorylation BP
GO:0016311 dephosphorylation BP
GO:0004725 protein tyrosine phosphatase activity MF
GO:0016791 phosphatase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values