Gene loci information

Transcript annotation

  • This transcript has been annotated as Beta-1,4-mannosyltransferase egh.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12745 g12745.t1 TSS g12745.t1 25672432 25672432
chr_1 g12745 g12745.t1 isoform g12745.t1 25672847 25674322
chr_1 g12745 g12745.t1 exon g12745.t1.exon1 25672847 25673650
chr_1 g12745 g12745.t1 cds g12745.t1.CDS1 25672847 25673650
chr_1 g12745 g12745.t1 exon g12745.t1.exon2 25673732 25674322
chr_1 g12745 g12745.t1 cds g12745.t1.CDS2 25673732 25674322
chr_1 g12745 g12745.t1 TTS g12745.t1 25675339 25675339

Sequences

>g12745.t1 Gene=g12745 Length=1395
ATGTTAACATCAACTGCAAAGCACATTCTTCACTGCATCGCTCTCGGCGTGGTCATCACA
TTCTTTCTTTTTTCCTCTGGTGCTATAAAGACGAGTGACGATGATTATTTGGCAATCGAC
CCTTGGGAAGAGTATGGAACGTTTATGACAATTTTTCTTTATACCATTCGTAGTATATCT
ATATTGATACTGCCACAAATGCTTTGCAATTTTCTTGGGCTTGTTTGCTTCAATGCTTTC
CCTGACAAAGTTGTTCTCAAAGGATCACCACTTCTGGCACCATTCATTTGCATACGAGTC
GTTACTAGAGGTGATTTTGCCGACCTTGTGAAGGCCAATGTTATGAGAAATATGAATACA
TGTTTAGACACGGGACTTGAGAATTTTCTTATAGAAGTTGTTACCGATAAGGCAGTAAAT
CTTCCGAAACATCGTCGAATTAGAGAGATTGTGGTACCGAAAGATTATAAAACAAAATCT
GGTGCATTATTTAAAGCACGTGCTCTTCAATATTGCTTAGAAGACAATGTTAATGTATTA
AATCCAAATGACTGGATCGTTCACTTAGATGAAGAGACCATACTTACAGAAAATAGTGTT
CGAGGCATCACAAATTTTGTTTTAGATGGCAAACATCCTTTTGGTCAAGGATTAATTACA
TACGCAAATGAAAGTATTGTCAACATTTTTACAACACTTGCAGACAGCTTCCGAGTATCT
GATGATATGGGAAAATTGAGATTTCAGTTTAAAGTTTTTCATAAACCACCATTTAGTTGG
AAAGGCAGTTATGTTGTTACACAGCTACATGCAGAAAAAGATGTTTCATTTGATAATGGT
ATGGATGGATCAGTTGCAGAAGATTGTTATTTTGCGATGAAAGCATTCAGCAGAGGATAC
ACTTTTGATTTTATTGATGGTGAAATGTATGAAAAATCACCGTTTACAATACTCGATTTT
ATTCAACAACGCAAACGTTGGCTTCAGGGAATTTTGTTGGTAATTCATTCAAAAGCCATT
CCATTTAAATATAAATCGTTCCTCGCACTAAGTGTCTACAGCTGGATTATGATGCCACTT
TCATCATCAAATATTTTTTTCGCCATCTACATGCCGATTCCATGTCCATTCATATTAGAC
CTTATTTGTTCTTTTCTCGGTGGAATTAGTGTCTATATGTACGTTTATGGTGTTTATAAA
TCATTTCCATTAAAACGCATTGGATTCTTTAAGTCAGTTTTGTACATTATTGGAGCACTC
GCTATGATACCATTTAATTTAGTAATTGAAAATATCGCTGTGATGTGGGGTGTATTGAGC
AATAAGCATAGATTTTATGTTGTACAGAAAGAAGTATCAATGACAACAGAACAACGTCCA
TTAATGACAGTTTAA

>g12745.t1 Gene=g12745 Length=464
MLTSTAKHILHCIALGVVITFFLFSSGAIKTSDDDYLAIDPWEEYGTFMTIFLYTIRSIS
ILILPQMLCNFLGLVCFNAFPDKVVLKGSPLLAPFICIRVVTRGDFADLVKANVMRNMNT
CLDTGLENFLIEVVTDKAVNLPKHRRIREIVVPKDYKTKSGALFKARALQYCLEDNVNVL
NPNDWIVHLDEETILTENSVRGITNFVLDGKHPFGQGLITYANESIVNIFTTLADSFRVS
DDMGKLRFQFKVFHKPPFSWKGSYVVTQLHAEKDVSFDNGMDGSVAEDCYFAMKAFSRGY
TFDFIDGEMYEKSPFTILDFIQQRKRWLQGILLVIHSKAIPFKYKSFLALSVYSWIMMPL
SSSNIFFAIYMPIPCPFILDLICSFLGGISVYMYVYGVYKSFPLKRIGFFKSVLYIIGAL
AMIPFNLVIENIAVMWGVLSNKHRFYVVQKEVSMTTEQRPLMTV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g12745.t1 PANTHER PTHR16779 BETA-1,4-MANNOSYLTRANSFERASE EGH 3 450 6.4E-147
1 g12745.t1 Pfam PF13632 Glycosyl transferase family group 2 185 372 6.6E-42
9 g12745.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
19 g12745.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 31 -
14 g12745.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 32 50 -
18 g12745.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 51 77 -
10 g12745.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 78 346 -
17 g12745.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 347 371 -
12 g12745.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 372 376 -
16 g12745.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 377 396 -
11 g12745.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 397 407 -
15 g12745.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 408 429 -
13 g12745.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 430 464 -
8 g12745.t1 SUPERFAMILY SSF53448 Nucleotide-diphospho-sugar transferases 165 378 2.11E-7
4 g12745.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 29 -
3 g12745.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 55 77 -
5 g12745.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 351 373 -
6 g12745.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 377 399 -
7 g12745.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 412 434 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0019187 beta-1,4-mannosyltransferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values