Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative protein kinase C delta type-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12754 g12754.t1 isoform g12754.t1 25774647 25781883
chr_1 g12754 g12754.t1 exon g12754.t1.exon1 25774647 25774794
chr_1 g12754 g12754.t1 cds g12754.t1.CDS1 25774647 25774794
chr_1 g12754 g12754.t1 exon g12754.t1.exon2 25778444 25778539
chr_1 g12754 g12754.t1 cds g12754.t1.CDS2 25778444 25778539
chr_1 g12754 g12754.t1 exon g12754.t1.exon3 25778875 25779011
chr_1 g12754 g12754.t1 cds g12754.t1.CDS3 25778875 25779011
chr_1 g12754 g12754.t1 exon g12754.t1.exon4 25779120 25779293
chr_1 g12754 g12754.t1 cds g12754.t1.CDS4 25779120 25779293
chr_1 g12754 g12754.t1 exon g12754.t1.exon5 25780355 25780509
chr_1 g12754 g12754.t1 cds g12754.t1.CDS5 25780355 25780509
chr_1 g12754 g12754.t1 exon g12754.t1.exon6 25780916 25781016
chr_1 g12754 g12754.t1 cds g12754.t1.CDS6 25780916 25781016
chr_1 g12754 g12754.t1 exon g12754.t1.exon7 25781088 25781108
chr_1 g12754 g12754.t1 cds g12754.t1.CDS7 25781088 25781108
chr_1 g12754 g12754.t1 exon g12754.t1.exon8 25781169 25781194
chr_1 g12754 g12754.t1 cds g12754.t1.CDS8 25781169 25781194
chr_1 g12754 g12754.t1 exon g12754.t1.exon9 25781341 25781661
chr_1 g12754 g12754.t1 cds g12754.t1.CDS9 25781341 25781661
chr_1 g12754 g12754.t1 exon g12754.t1.exon10 25781734 25781883
chr_1 g12754 g12754.t1 cds g12754.t1.CDS10 25781734 25781883
chr_1 g12754 g12754.t1 TSS g12754.t1 NA NA
chr_1 g12754 g12754.t1 TTS g12754.t1 NA NA

Sequences

>g12754.t1 Gene=g12754 Length=1329
ATGCAATATGAGCTTTACTTTCTTCACTATCTTGCAGATTGTGACATAAATTGTCATAAG
AAATGTGAGAAGTTGGCTGCAAATTTATGTGGTGTAAATCAAAAATTAATTGTTGAAGCA
CTTGCATCAGTGCGGCGTGAAAATCAAGAGCGACTTGAGGCTGATGCATCAAGAAATAGC
CGCGAATCACTGACACCACCAAGTCTCAAGCCAGCATATAAAATTAATCACGATGAGGAT
TCAGAAACATCTTACACATATGCGCAGTTCCAGAAAACAGGCAAAATGACGGCACCTGCA
ACAGTGATTCCACGTTTTAGAAAGTACAGTGTAGAAGATTTTCATTTTTTGACTGTTCTT
GGAAAGGGCAGTTTTGGAAAAGTATTTTTAGCAGAATTGAAGAATACAGATTATTATTAT
GCAATAAAATGTTTAAAAAAAGATGTTGTATTGGAAGATGATGATGTGGAATGTACCTTA
ATCGAGAGAAAAGTATTGGCATTAGGAACAAGGCATCCATATCTTTGTCATCTATTTTGT
ACATTTCAAACTGATAGTCATTTGTTTTTTGTACTATCTTATCTGACGGGAGGTGATTTG
ATGTTTCACATACAGCAAAGTGGACGATTTACAGAAAAAAGAGCAAGATTTTATGCTGCA
GAAATTGTATCAGCTTTAAAATTCCTTCATCGAAAAGGAATCGTTTATCGAGATTTAAAA
TTAGACAATGTGCTGTTGGATCAAGATGGACATGTGAGGATAGCAGATTTTGGAATGTGT
AAACTTGAAGTATATTTGGATAAGACAGCAGATTCATTTTGTGGTACACCAGATTATATG
GCACCAGAAATAATAAAAGGTTTACATTACAATCAATCTGTTGATTGGTGGTCATTTGGA
GTTTTGGTCTATGAAATGCTCATCGGTCAGAGTCCATTCAGTGGTTGCGATGAAGACGAA
CTATTTTGGTCAATATGCAATGAAATTCCATGGTATCCGCATTATTTGTCACAAGAAAGT
CTGAAACTGCTGCAGTCATTGTTAGAGAAAGATGTAAGTTTAAGATTAGGATCAATGGAA
TCACCAGAAGGTGACATCAAATATCATCCATTCTTTGCTGAAATTAATTGGGAGAAATTA
GAGCGAAAAGAACTTGAACCGCCTTTCAAGCCACAAGTTAGACATCCGCTCGACACGCAA
TATTTCGACAGTCAATTTACTCGTGAACGTGCACGACTGACGCCCATTGACAAAAACATA
CTCATTAGCATGGATCAGAAGCAATTTGAAGGCTTTAGTTATACAAATCCAAATGCAACT
CTAACGTGA

>g12754.t1 Gene=g12754 Length=442
MQYELYFLHYLADCDINCHKKCEKLAANLCGVNQKLIVEALASVRRENQERLEADASRNS
RESLTPPSLKPAYKINHDEDSETSYTYAQFQKTGKMTAPATVIPRFRKYSVEDFHFLTVL
GKGSFGKVFLAELKNTDYYYAIKCLKKDVVLEDDDVECTLIERKVLALGTRHPYLCHLFC
TFQTDSHLFFVLSYLTGGDLMFHIQQSGRFTEKRARFYAAEIVSALKFLHRKGIVYRDLK
LDNVLLDQDGHVRIADFGMCKLEVYLDKTADSFCGTPDYMAPEIIKGLHYNQSVDWWSFG
VLVYEMLIGQSPFSGCDEDELFWSICNEIPWYPHYLSQESLKLLQSLLEKDVSLRLGSME
SPEGDIKYHPFFAEINWEKLERKELEPPFKPQVRHPLDTQYFDSQFTRERARLTPIDKNI
LISMDQKQFEGFSYTNPNATLT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g12754.t1 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 111 430 4.1E-138
7 g12754.t1 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 198 403 4.1E-138
12 g12754.t1 MobiDBLite mobidb-lite consensus disorder prediction 51 72 -
3 g12754.t1 PANTHER PTHR24356:SF347 PROTEIN KINASE C DELTA TYPE HOMOLOG-RELATED 13 438 1.3E-213
4 g12754.t1 PANTHER PTHR24356 SERINE/THREONINE-PROTEIN KINASE 13 438 1.3E-213
2 g12754.t1 Pfam PF00069 Protein kinase domain 114 360 1.6E-64
1 g12754.t1 Pfam PF00433 Protein kinase C terminal domain 393 434 3.2E-10
9 g12754.t1 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 120 143 -
8 g12754.t1 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 234 246 -
14 g12754.t1 ProSiteProfiles PS50011 Protein kinase domain profile. 114 372 47.17
13 g12754.t1 ProSiteProfiles PS51285 AGC-kinase C-terminal domain profile. 373 442 18.703
11 g12754.t1 SMART SM00220 serkin_6 114 372 1.8E-95
10 g12754.t1 SMART SM00133 pkinase_C_6 373 436 2.8E-24
5 g12754.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 111 437 7.55E-94

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004674 protein serine/threonine kinase activity MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed