General information for g12759.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Hydroxyacylglutathione hydrolase, mitochondrial.
Parent gene
- The parent gene g12759 is located on chr_1: 25816024..25817434 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12759 | g12759.t12 | TTS | g12759.t12 | 25815885 | 25815885 |
| chr_1 | g12759 | g12759.t12 | isoform | g12759.t12 | 25816024 | 25817434 |
| chr_1 | g12759 | g12759.t12 | exon | g12759.t12.exon1 | 25816024 | 25816457 |
| chr_1 | g12759 | g12759.t12 | cds | g12759.t12.CDS1 | 25816024 | 25816344 |
| chr_1 | g12759 | g12759.t12 | exon | g12759.t12.exon2 | 25816528 | 25816782 |
| chr_1 | g12759 | g12759.t12 | exon | g12759.t12.exon3 | 25816887 | 25816995 |
| chr_1 | g12759 | g12759.t12 | exon | g12759.t12.exon4 | 25817118 | 25817235 |
| chr_1 | g12759 | g12759.t12 | exon | g12759.t12.exon5 | 25817373 | 25817434 |
| chr_1 | g12759 | g12759.t12 | TSS | g12759.t12 | 25817448 | 25817448 |
Sequences
>g12759.t12 Gene=g12759 Length=978
TTTGTTTACATTGAAATTTTCTTGTAATAAAATATTAATTTTAAAGTGTTTTAAAACTAA
AAATAAGCTATCAACAATTTAATATCATTAAGTGCGATTATTAGATGATTTCACGGGTTT
TTAATTCTATTACAAGCAAATTCTCTCAGTCACAATCATTAACTGCAGCATATTTTACAT
ATAAAGCTTGGAGACAAAACGGTTTGAGAGGTACACATAGTTCACAACAATCTATCAATA
TGACTGATATGAGTGTTAGAATTTTACCGGCATTGTCAGATAACTACATATCCAGTGAAC
CCGGAAACTGTCATTGAAGCGGTGAAGAATGAGAATGTTGAACTCAAGTCAGTGCTTACA
ACACATCATCATTGGGATCATGCTGGAGGAAACGAAAAACTTCTCTCGCTCTTTGGTAAA
CCATTGACAGTTTACGGCGGAGATGACAGAATTGGCGGTCTCAACAAGAAAGTTAAACAA
GATGACAAGTTCAATATCGGCAATCTGAATGTTAGCTGCATATTCACGCCTTGTCACACA
AGTGGTCATATTTGTTATTATGTGGAGTCATCGACTGCTGAACAAAAAGCTGTTTTTACG
GGTGATACGCTTTTTCTTGGTGGCTGTGGTCGATTTTTTGAAGGAACGGCTGAACAAATG
TATTCTGCTTTAATTGAGAAGCTATCAAGTTTGCCTGATGAGACAAAAGTTTTCTGTGGT
CATGAATATGCACTGGGTAATTTGAAATTTGGAAATCATGTTGAGCCTGATAATAAAGAC
ATTTTGGCTAAAATTGAATGGACAAAAGCAAAACGTGATCAAAACGAGCCATCAGTACCA
TCCACAATAGGCGAAGAAAAGCTTATTAATCCATTTATGCGTGTTAATACTGAGTCAGTT
CAGAAATTTGCAAATTCTATTGGAAAACCCATTGATACGATGGCTCATATTCGTAAAGTT
AAAGATTCATTCAAATAA
>g12759.t12 Gene=g12759 Length=106
MYSALIEKLSSLPDETKVFCGHEYALGNLKFGNHVEPDNKDILAKIEWTKAKRDQNEPSV
PSTIGEEKLINPFMRVNTESVQKFANSIGKPIDTMAHIRKVKDSFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g12759.t12 | Gene3D | G3DSA:3.60.15.10 | - | 1 | 106 | 0 |
| 2 | g12759.t12 | PANTHER | PTHR11935 | BETA LACTAMASE DOMAIN | 1 | 106 | 0 |
| 1 | g12759.t12 | Pfam | PF16123 | Hydroxyacylglutathione hydrolase C-terminus | 23 | 105 | 0 |
| 3 | g12759.t12 | SUPERFAMILY | SSF56281 | Metallo-hydrolase/oxidoreductase | 2 | 105 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
