Gene loci information

Transcript annotation

  • This transcript has been annotated as Phosphatidylinositide phosphatase SAC1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12763 g12763.t9 isoform g12763.t9 25839120 25840333
chr_1 g12763 g12763.t9 exon g12763.t9.exon1 25839120 25839966
chr_1 g12763 g12763.t9 cds g12763.t9.CDS1 25839122 25839966
chr_1 g12763 g12763.t9 exon g12763.t9.exon2 25840096 25840187
chr_1 g12763 g12763.t9 cds g12763.t9.CDS2 25840096 25840187
chr_1 g12763 g12763.t9 exon g12763.t9.exon3 25840308 25840333
chr_1 g12763 g12763.t9 cds g12763.t9.CDS3 25840308 25840333
chr_1 g12763 g12763.t9 TSS g12763.t9 25840439 25840439
chr_1 g12763 g12763.t9 TTS g12763.t9 NA NA

Sequences

>g12763.t9 Gene=g12763 Length=965
ATGGAGGTCCATGATGATATGAACTTCTACATCACAATAGACAAGTTCTTTATAGAACCT
AATGGGAAGAGCGAAGTATTAATTATAGACCGTCTAACTAAAGAGTTTAGTGTTCAAGTT
AGAACAAATCAAATTCCCAATACGTCAAGTGTGAGAAAAATATGTGGAATACTCGGAACA
ATTAACTTAATTTCGGGCACTCATTTAGTAGTAGCAACGCATCGAATAGCAGTTGGTTTT
ATAAATAATCAAGTAATATGGCGTCTCGCAGGATTCGATATTATTCAATACATTCCATCG
ATGCTTCATTTAAACGAAGTACAAAAGAAGGAGAATGAAAATTATTTGGCGATGATTCGT
ACAATTTTGGATACGCCATATCTTTATTTTAGTTACTCGTATGATTTAACACACTCGCTT
CAGCGGTTACATTCAATGTCGCCCGATCAACTGTCATTGAGTTTGTTTGAAAGAGCAGAT
CCACGATTCGTTTGGAATAGAAACTTGTTGAAACCTTTTCAAAGACCAGAGATGCGTCGT
TACTGTCTTCCTCTACTATTAGGATTTATATCAATTAATCAAGTGAGCATCAATGGTCAT
GTCTTTTCATGGATTTTAATTTCACGACGTTCAACTAGACGTGCTGGTACTCGTCTTTTC
TGTCGTGGGATTGATAATGATGGAAATGTCTCAAATTTTGTTGAGACTGAGCAAATTGTT
GAATACAATAGTGAAAAAGTGTCCTTTGTACAAATTCGCGGAAGTATACCGATGTTTTGG
TATCAAACCCCAAATCTTCGTCTTAAGCCACGTCCAAAAATCGATAAAACTCGTGATAGC
TTACCGCCATATCAAATTCACATGGATGAATTAGTGATGCACTATGGAAAAATTGTTCTT
GTCAATTTAATTGATCATCGTGGTGCTGAAGATGAGCTAGAAAAAGCATTTGCTCAACTT
GTAAG

>g12763.t9 Gene=g12763 Length=321
MEVHDDMNFYITIDKFFIEPNGKSEVLIIDRLTKEFSVQVRTNQIPNTSSVRKICGILGT
INLISGTHLVVATHRIAVGFINNQVIWRLAGFDIIQYIPSMLHLNEVQKKENENYLAMIR
TILDTPYLYFSYSYDLTHSLQRLHSMSPDQLSLSLFERADPRFVWNRNLLKPFQRPEMRR
YCLPLLLGFISINQVSINGHVFSWILISRRSTRRAGTRLFCRGIDNDGNVSNFVETEQIV
EYNSEKVSFVQIRGSIPMFWYQTPNLRLKPRPKIDKTRDSLPPYQIHMDELVMHYGKIVL
VNLIDHRGAEDELEKAFAQLV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g12763.t9 Coils Coil Coil 306 321 -
2 g12763.t9 PANTHER PTHR45662 PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 14 321 1.5E-89
1 g12763.t9 Pfam PF02383 SacI homology domain 56 321 4.7E-78
6 g12763.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 184 -
7 g12763.t9 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 185 207 -
5 g12763.t9 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 208 321 -
4 g12763.t9 ProSiteProfiles PS50275 Sac phosphatase domain profile. 119 321 50.862

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0042578 phosphoric ester hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed