General information for g1281.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1281 is located on chr_3: 9422227..9428145 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1281 | g1281.t23 | isoform | g1281.t23 | 9421548 | 9422784 |
| chr_3 | g1281 | g1281.t23 | exon | g1281.t23.exon1 | 9421548 | 9421983 |
| chr_3 | g1281 | g1281.t23 | exon | g1281.t23.exon2 | 9422041 | 9422608 |
| chr_3 | g1281 | g1281.t23 | cds | g1281.t23.CDS1 | 9422072 | 9422608 |
| chr_3 | g1281 | g1281.t23 | exon | g1281.t23.exon3 | 9422665 | 9422784 |
| chr_3 | g1281 | g1281.t23 | cds | g1281.t23.CDS2 | 9422665 | 9422784 |
| chr_3 | g1281 | g1281.t23 | TTS | g1281.t23 | 9422894 | 9422894 |
| chr_3 | g1281 | g1281.t23 | TSS | g1281.t23 | NA | NA |
Sequences
>g1281.t23 Gene=g1281 Length=1124
ATGACTCAGAAAGAAAACGAATTTAACAATTTAATTAACAATAACTCTCAACTTCTTACA
AGTGCAGCTGATATATTACAGCAAATATTTGAGAATTTTTCTGGACTTTTGGAAGATATC
TCGAAATTGAGCTTCAAAAATGATGTTGAACAGTCATCAAATATTTTTGAAATAAATCAA
TGCAAAAGGAAAGTTTCGGAATATATACATCAAGCTAATCAATCATTACACATTGAAATT
CCTAATTTATTAGAAGGTAATAACTCTAAATTCTTTAAAAATTCATTTTAATAAAATCTC
TTTTTCCTATAGTTGTGAAAGAATCTAAACAGAAAATTATTGAATATGAAGAAATTATTA
AAAATTATGAAAATGACATCGAAAAACTGACAGAACGTTTGAAAAATGCAGAAAATAAGT
GTACAGAGACAAAGAACTTAGAACAACAAAACACTTATAGTGCTGCAATGGGATCAACTT
TGGCAAAAATGTTGTGGAAAACTTCAAAATCACAAGGAGCAATTCAAACTTATATCGATA
CTGGCACTATGCATCCATTTCTTAATCTTTCACATAATACAATTGCCGGATTTCAAGATA
CATATCATGAAAATTTACCTGCACCTGAAACATTTGAAGTTAGCTATTTACTTTCTCTTC
TGGGTATTTACACAAATATTGTGGCACAATCTATTGGACGCGATTATGTTTTAACTCATG
AGATTGGAGTTTTGGGAGTAAAAAGAATTTTGTCATATTTCGGTGAAATGAAAATGCCAT
CAGCTCATCTTCTCAAAAGATTAATTCTCATGTTTCTTTATAATTTGAGTATAACAAATG
AGGGAGCAAAATTGATAGCAGAGAGTGAAACAGGAATTGATAACATTTTAAAGTGTTTAA
GTGTAGAACATGGAGACGAGATTCAAGGAATCGCTCTTTCTCTCTTGGTGTCTCTTGTCA
ATGAGCTTGATTCTCATAATTTTCAAAAACAATTGTTTATGAAGCTATCACAAAATGATA
ATTTTCAAAAATTGATGATATGCAAGGACGTGAGTTTAGTGACACTTTGCAGAAAATTAT
TAGAGAAATTAGAGAACAATACATGCAGTTTATTCGATTTTTAA
>g1281.t23 Gene=g1281 Length=218
MGSTLAKMLWKTSKSQGAIQTYIDTGTMHPFLNLSHNTIAGFQDTYHENLPAPETFEVSY
LLSLLGIYTNIVAQSIGRDYVLTHEIGVLGVKRILSYFGEMKMPSAHLLKRLILMFLYNL
SITNEGAKLIAESETGIDNILKCLSVEHGDEIQGIALSLLVSLVNELDSHNFQKQLFMKL
SQNDNFQKLMICKDVSLVTLCRKLLEKLENNTCSLFDF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g1281.t23 | PANTHER | PTHR15434 | HEAT SHOCK FACTOR 2-BINDING PROTEIN | 1 | 209 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
