General information for g1282.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Carnosine N-methyltransferase.
Parent gene
- The parent gene g1282 is located on chr_3: 9423055..9424333 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1282 | g1282.t1 | TSS | g1282.t1 | 9422940 | 9422940 |
| chr_3 | g1282 | g1282.t1 | isoform | g1282.t1 | 9423055 | 9424233 |
| chr_3 | g1282 | g1282.t1 | exon | g1282.t1.exon1 | 9423055 | 9423802 |
| chr_3 | g1282 | g1282.t1 | cds | g1282.t1.CDS1 | 9423055 | 9423802 |
| chr_3 | g1282 | g1282.t1 | exon | g1282.t1.exon2 | 9423857 | 9424233 |
| chr_3 | g1282 | g1282.t1 | cds | g1282.t1.CDS2 | 9423857 | 9424233 |
| chr_3 | g1282 | g1282.t1 | TTS | g1282.t1 | 9424372 | 9424372 |
Sequences
>g1282.t1 Gene=g1282 Length=1125
ATGAATCATAATTCTCTTGATAACGAAGAAGATGAAAAATATTTTGACGAAATTGAAAGA
GCAAATTTTATTAAAGTCATAAATTCGTTTAAAAACTATAGAAAACATAACTATCATCGT
ATAGAACAGAGATTAATTTACATATCTCAATTGCCGTTAAGACAACAACAACTTCTAGAA
AAATACAAAAAGACGCTCAATTCAACAAAGCAATGCATCGATCAAAATAATTTACTGATT
GATAAATTCTTAGCTGGCACAAATGAATTATTTGTAAACGCAGCAGTCAATGAGATACAT
GGTGAAGATATATCGAAAAATGGAGAGCAACTAACGTTTTTTGATAGCGAGTCCGATCGA
GTAATTGTTACTCTAAAACAAATCGTGCGTGATTGGACAGATTTGGGGGCAAGTGAGAGA
GAAGAAAGCTATAAACCAATCCTTGATGCGCTAAGTGAAAATTTTGACATTACAACAATG
GAAAAAAATCAATATCGTGTTCTCGTCCCTGGTGCAGGCTTAGCTAGATTAGTTTATGAA
ATATCAACACTTGGCCTTTATTGCGAAGGAAATGAGTTCTCATTATTTATGTTGATTGTA
TCTAATTTTTTACTCAATCGTTGCCTATTCGACTCGCAATATGAATTGTTTCCATTTTGT
CATAATTTTATGAATAATCTCAATCGAAATGATCCTCTCTTATCATGTCGTTTTCCAGAT
GTTTCGCCATTTCAAAACCCACCAAAAGGTGAAATGAATATGATTGCTGGCGACTTTTTA
CAAGTTTATGGACAACCGGCTCAATATGATCAATGGGATGCAGTGACTACATGCTTTTTC
CTTGATTGTGCTAATAATGTTGTTGATTTCATTGAAATTATACACAAAATTCTAAAGAAA
GGTGGTATCTGGATTAATTTAGGACCTCTTTTATATCACTACTGTGATATGAACAACGAG
CTTAGCTTAGAACCGAGCTACGAAGATATTCGTGAAATAATTGAAAAAACTGGCTTCGAA
TATTTGAAAGAAAATAAAAATTGCAGAACCAGATACTCACAAAATGAGCTGTCGATGGCA
AAATTAGAGTACAGATCTGTGTTCTTTGTTGTTAGAAAAAAGTAA
>g1282.t1 Gene=g1282 Length=374
MNHNSLDNEEDEKYFDEIERANFIKVINSFKNYRKHNYHRIEQRLIYISQLPLRQQQLLE
KYKKTLNSTKQCIDQNNLLIDKFLAGTNELFVNAAVNEIHGEDISKNGEQLTFFDSESDR
VIVTLKQIVRDWTDLGASEREESYKPILDALSENFDITTMEKNQYRVLVPGAGLARLVYE
ISTLGLYCEGNEFSLFMLIVSNFLLNRCLFDSQYELFPFCHNFMNNLNRNDPLLSCRFPD
VSPFQNPPKGEMNMIAGDFLQVYGQPAQYDQWDAVTTCFFLDCANNVVDFIEIIHKILKK
GGIWINLGPLLYHYCDMNNELSLEPSYEDIREIIEKTGFEYLKENKNCRTRYSQNELSMA
KLEYRSVFFVVRKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1282.t1 | Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 253 | 374 | 2e-07 |
| 2 | g1282.t1 | PANTHER | PTHR12303:SF6 | CARNOSINE N-METHYLTRANSFERASE | 13 | 374 | 0e+00 |
| 3 | g1282.t1 | PANTHER | PTHR12303 | UNCHARACTERIZED | 13 | 374 | 0e+00 |
| 1 | g1282.t1 | Pfam | PF07942 | N2227-like protein | 116 | 374 | 0e+00 |
| 5 | g1282.t1 | SMART | SM01296 | N2227_2 | 105 | 374 | 0e+00 |
| 4 | g1282.t1 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 122 | 370 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K19787 (carnosine N-methyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
