General information for g1282.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Carnosine N-methyltransferase.
Parent gene
- The parent gene g1282 is located on chr_3: 9423055..9424333 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1282 | g1282.t6 | TSS | g1282.t6 | 9422940 | 9422940 |
| chr_3 | g1282 | g1282.t6 | isoform | g1282.t6 | 9423055 | 9424333 |
| chr_3 | g1282 | g1282.t6 | exon | g1282.t6.exon1 | 9423055 | 9423588 |
| chr_3 | g1282 | g1282.t6 | cds | g1282.t6.CDS1 | 9423055 | 9423588 |
| chr_3 | g1282 | g1282.t6 | exon | g1282.t6.exon2 | 9423657 | 9423802 |
| chr_3 | g1282 | g1282.t6 | cds | g1282.t6.CDS2 | 9423657 | 9423659 |
| chr_3 | g1282 | g1282.t6 | exon | g1282.t6.exon3 | 9423857 | 9424333 |
| chr_3 | g1282 | g1282.t6 | TTS | g1282.t6 | 9424372 | 9424372 |
Sequences
>g1282.t6 Gene=g1282 Length=1157
ATGAATCATAATTCTCTTGATAACGAAGAAGATGAAAAATATTTTGACGAAATTGAAAGA
GCAAATTTTATTAAAGTCATAAATTCGTTTAAAAACTATAGAAAACATAACTATCATCGT
ATAGAACAGAGATTAATTTACATATCTCAATTGCCGTTAAGACAACAACAACTTCTAGAA
AAATACAAAAAGACGCTCAATTCAACAAAGCAATGCATCGATCAAAATAATTTACTGATT
GATAAATTCTTAGCTGGCACAAATGAATTATTTGTAAACGCAGCAGTCAATGAGATACAT
GGTGAAGATATATCGAAAAATGGAGAGCAACTAACGTTTTTTGATAGCGAGTCCGATCGA
GTAATTGTTACTCTAAAACAAATCGTGCGTGATTGGACAGATTTGGGGGCAAGTGAGAGA
GAAGAAAGCTATAAACCAATCCTTGATGCGCTAAGTGAAAATTTTGACATTACAACAATG
GAAAAAAATCAATATCGTGTTCTCGTCCCTGGTGCAGGCTTAGCTAGATTAGTTTAATTT
TTTACTCAATCGTTGCCTATTCGACTCGCAATATGAATTGTTTCCATTTTGTCATAATTT
TATGAATAATCTCAATCGAAATGATCCTCTCTTATCATGTCGTTTTCCAGATGTTTCGCC
ATTTCAAAACCCACCAAAAGGTGAAATGAATATGATTGCTGGCGACTTTTTACAAGTTTA
TGGACAACCGGCTCAATATGATCAATGGGATGCAGTGACTACATGCTTTTTCCTTGATTG
TGCTAATAATGTTGTTGATTTCATTGAAATTATACACAAAATTCTAAAGAAAGGTGGTAT
CTGGATTAATTTAGGACCTCTTTTATATCACTACTGTGATATGAACAACGAGCTTAGCTT
AGAACCGAGCTACGAAGATATTCGTGAAATAATTGAAAAAACTGGCTTCGAATATTTGAA
AGAAAATAAAAATTGCAGAACCAGATACTCACAAAATGAGCTGTCGATGGCAAAATTAGA
GTACAGATCTGTGTTCTTTGTTGTTAGAAAAAAGTAATCTAATCATAAGTGAGGCACATG
ACTATCATTGACAAAAATCACCAGTGAAATGAATTATTTTTCTATTAAAAGACATGAAAT
AATGTAACAATAATACT
>g1282.t6 Gene=g1282 Length=178
MNHNSLDNEEDEKYFDEIERANFIKVINSFKNYRKHNYHRIEQRLIYISQLPLRQQQLLE
KYKKTLNSTKQCIDQNNLLIDKFLAGTNELFVNAAVNEIHGEDISKNGEQLTFFDSESDR
VIVTLKQIVRDWTDLGASEREESYKPILDALSENFDITTMEKNQYRVLVPGAGLARLV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g1282.t6 | PANTHER | PTHR12303:SF6 | CARNOSINE N-METHYLTRANSFERASE | 13 | 178 | 0 |
| 3 | g1282.t6 | PANTHER | PTHR12303 | UNCHARACTERIZED | 13 | 178 | 0 |
| 1 | g1282.t6 | Pfam | PF07942 | N2227-like protein | 116 | 178 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
