General information for g12820.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Kinesin-like protein Klp10A.
Parent gene
- The parent gene g12820 is located on chr_1: 26427619..26433574 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12820 | g12820.t1 | isoform | g12820.t1 | 26426866 | 26428087 |
| chr_1 | g12820 | g12820.t1 | exon | g12820.t1.exon1 | 26426866 | 26427008 |
| chr_1 | g12820 | g12820.t1 | cds | g12820.t1.CDS1 | 26426866 | 26427008 |
| chr_1 | g12820 | g12820.t1 | exon | g12820.t1.exon2 | 26427619 | 26427802 |
| chr_1 | g12820 | g12820.t1 | cds | g12820.t1.CDS2 | 26427619 | 26427802 |
| chr_1 | g12820 | g12820.t1 | exon | g12820.t1.exon3 | 26427890 | 26428087 |
| chr_1 | g12820 | g12820.t1 | cds | g12820.t1.CDS3 | 26427890 | 26428087 |
| chr_1 | g12820 | g12820.t1 | TSS | g12820.t1 | NA | NA |
| chr_1 | g12820 | g12820.t1 | TTS | g12820.t1 | NA | NA |
Sequences
>g12820.t1 Gene=g12820 Length=525
ATGATCAGTCCGGGACTGTCATCTTGTGAACACACTCTTAACACTTTACGATATGCAAAT
CGTGTTAAAGAATTAGTAGCAATAGATCCATCTGAACGAAATGAAATGATCGATGATGAA
GAACCAATGGACTCAGAACCAAATGAGCAGAATGGAAATGGAAAGAAAATGGATCTGTCA
CAGTTGCGCTCACTTAATCCTTTCCCAGAGCACGACATTAGTGTAGAATTGTATAATCAG
CATGCTGTTATTTCGGAGCTACAACAAGTTGAAGATGAAACGATTGATCAATTGAAATTA
CTCGCTGAATTTTATACAAAATCCTTACCCGAATTATTGGAGTTATGTAGAATGACAAAT
AACCCTGATTATGATCAGGATGCATTTTGTAAAAAACGAGGAAACGAGCTTTTGCGACAG
CTATTCTTTTATGCTCAGCCGTGTGCAGATTTGTTAACCGATTTTCAATCAAAAATTGAA
AAAGAAGAAATGATATCACATAAAATGATGCCTGGAAAACGCTAA
>g12820.t1 Gene=g12820 Length=174
MISPGLSSCEHTLNTLRYANRVKELVAIDPSERNEMIDDEEPMDSEPNEQNGNGKKMDLS
QLRSLNPFPEHDISVELYNQHAVISELQQVEDETIDQLKLLAEFYTKSLPELLELCRMTN
NPDYDQDAFCKKRGNELLRQLFFYAQPCADLLTDFQSKIEKEEMISHKMMPGKR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g12820.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 54 | - |
| 1 | g12820.t1 | PANTHER | PTHR24115:SF454 | KINESIN-LIKE PROTEIN KIF2C | 1 | 170 | 9.1E-18 |
| 2 | g12820.t1 | PANTHER | PTHR24115 | KINESIN-RELATED | 1 | 170 | 9.1E-18 |
| 4 | g12820.t1 | ProSiteProfiles | PS50067 | Kinesin motor domain profile. | 1 | 25 | 12.334 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:1990939 | NA | NA |
| GO:0007018 | microtubule-based movement | BP |
| GO:0005524 | ATP binding | MF |
| GO:0008017 | microtubule binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
