General information for g12833.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Amidophosphoribosyltransferase.
Parent gene
- The parent gene g12833 is located on chr_1: 26469425..26470707 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12833 | g12833.t3 | isoform | g12833.t3 | 26469139 | 26469989 |
| chr_1 | g12833 | g12833.t3 | exon | g12833.t3.exon1 | 26469139 | 26469186 |
| chr_1 | g12833 | g12833.t3 | cds | g12833.t3.CDS1 | 26469140 | 26469186 |
| chr_1 | g12833 | g12833.t3 | exon | g12833.t3.exon2 | 26469251 | 26469989 |
| chr_1 | g12833 | g12833.t3 | cds | g12833.t3.CDS2 | 26469251 | 26469989 |
| chr_1 | g12833 | g12833.t3 | TSS | g12833.t3 | 26470004 | 26470004 |
| chr_1 | g12833 | g12833.t3 | TTS | g12833.t3 | NA | NA |
Sequences
>g12833.t3 Gene=g12833 Length=787
ATGGAAGCGAAAACATCAACTAGCAAAAATAAGTCTGATGGAAAATACCAAATTAAAGGC
AAACGTTATGGACGTGGAGCGGTTGAAAGCGGTTTAACACATGAATGTGGAGTTTTTGGC
GCTATTGCTACAGGTGATTGGCCGACACAACTCGATATAGCCCAAATAGTTTGCCTTGGC
CTCGTTGCTCTTCAACATCGTGGACAAGAATCGGCTGGTATCGTTACAAGTGAAGGTGAT
CATAAGAAAAATTTCCATATACACAAAGGAATGGGAATGATTAATAATATTTTTACTGAT
GAGAATATCAAAAAGCTTAAAGGAAATCTCGGAATTGGTCATACACGATATTCTACATCA
GCTGCAAGTGAAGAAGTAAATTGTCAACCGTTTGTGGTTCATACTTCACATGGTGCCATA
GCATTAGCTCATAATGGTGAATTAGTAAATTGTGAAAGTTTAAGAAAAGAAGTGCTTGGA
AGAGGTGTGGGTCTATCTACGTTTAGTGACTCGGAATTAATTACACAATCACTTTGTGTT
AATCCACCAGTTGATGAAGTAAATGGACCTAATTGGCCATCAAGAATTCGTCATTTAATG
AAATTGACACCATTAAGTTATTCACTTGTCATCATGATGAAAGATAAAATTTATGGTGTA
CGTGATCCTTTTGGTAATCGTCCTTTGTGTCTTGGAAAAATTCTTCCATTGGAATCAACT
AATAAAATGGCAAACGGGCATGTAAATGGATACAGTAGTGACTCGTCAGATAAAATGACA
AATGGAC
>g12833.t3 Gene=g12833 Length=262
MEAKTSTSKNKSDGKYQIKGKRYGRGAVESGLTHECGVFGAIATGDWPTQLDIAQIVCLG
LVALQHRGQESAGIVTSEGDHKKNFHIHKGMGMINNIFTDENIKKLKGNLGIGHTRYSTS
AASEEVNCQPFVVHTSHGAIALAHNGELVNCESLRKEVLGRGVGLSTFSDSELITQSLCV
NPPVDEVNGPNWPSRIRHLMKLTPLSYSLVIMMKDKIYGVRDPFGNRPLCLGKILPLEST
NKMANGHVNGYSSDSSDKMTNG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g12833.t3 | Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate | 36 | 255 | 0.000 |
| 2 | g12833.t3 | PANTHER | PTHR11907:SF20 | AMIDOPHOSPHORIBOSYLTRANSFERASE | 29 | 240 | 0.000 |
| 3 | g12833.t3 | PANTHER | PTHR11907 | AMIDOPHOSPHORIBOSYLTRANSFERASE | 29 | 240 | 0.000 |
| 1 | g12833.t3 | Pfam | PF13522 | Glutamine amidotransferase domain | 107 | 232 | 0.000 |
| 6 | g12833.t3 | ProSiteProfiles | PS51278 | Glutamine amidotransferase type 2 domain profile. | 36 | 262 | 33.786 |
| 4 | g12833.t3 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 36 | 234 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
