General information for g12834.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Multifunctional protein ADE2.
Parent gene
- The parent gene g12834 is located on chr_1: 26473015..26477102 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12834 | g12834.t8 | TSS | g12834.t8 | 26471425 | 26471425 |
| chr_1 | g12834 | g12834.t8 | isoform | g12834.t8 | 26472226 | 26474416 |
| chr_1 | g12834 | g12834.t8 | exon | g12834.t8.exon1 | 26472226 | 26472445 |
| chr_1 | g12834 | g12834.t8 | exon | g12834.t8.exon2 | 26472522 | 26473428 |
| chr_1 | g12834 | g12834.t8 | cds | g12834.t8.CDS1 | 26472548 | 26473015 |
| chr_1 | g12834 | g12834.t8 | exon | g12834.t8.exon3 | 26473493 | 26473667 |
| chr_1 | g12834 | g12834.t8 | exon | g12834.t8.exon4 | 26473724 | 26473846 |
| chr_1 | g12834 | g12834.t8 | exon | g12834.t8.exon5 | 26473921 | 26473997 |
| chr_1 | g12834 | g12834.t8 | exon | g12834.t8.exon6 | 26474357 | 26474416 |
| chr_1 | g12834 | g12834.t8 | TTS | g12834.t8 | NA | NA |
Sequences
>g12834.t8 Gene=g12834 Length=1562
TGATATTATGAGACAAACAACAATTCTCGTCTTTGAAATCCTCGAACGTGCATGGACAGA
GAAAAACTGTGCACTCATTGATATGAAAATTGAATTTGGAGTAGATGAAAACGGCGAAAT
ACTTGTTGCTGATGTGATAGACAGCGATTCATGGCGTTTGTGGCCTTCGGGTGATAAACG
TTTGATGGTCGATAAGCAAGTATACAGAAATTTAACTACAAAAATGATCATTTGGTTGTG
ATTATTATGGGTTCACCTTCTGATAAGGAACACTGTCAAAAAATTGCCAAACATTGTAAT
GAACTTGGACTTAATACAGAAATGCGCGTTTCTTCAGCACACAAAGTTACAAAGGGCACA
CTTCAAATCATGTCAGAATATGAAGGAATTATCAAAAATCTCGTCTTTATCACAGTTGCT
GGTCGTTCAAACGGACTCGGACCAGTTTTATCTGGCAACACATCTTATCCAGTGATTAAC
TGTCCACCAATCAAAAGTGATACCATGAACATTGACTTGTGGTCTTCAATCAACTTGCCA
TCCGGTTTAGGATGTAGCACAGTAATCTATCCAGAAGCCGCAGCACTCAATGCAGCTCAA
ATTTTGGGTCTCAGCAACTTCATGATTTGGTCACGACTTAGAGTCAAGATGATTAATAAT
CTGATAAGCTTGAAAAAAGCTGATAAAGAATTGCGTGGAGTCAAGGAAGCTTAAACAATG
AATATCTTTTTATTTCCTTTTATAATTGCCATAATTTAGAGCTATATTCTTTTATATTTT
TTGGTCTTCAATAAAACATATTTTTATAATAATTTATTTTTTGTTGGTTTTTGTTTGAGA
AGAATTAGATGATGGTATGGCGCTTGGATCTAGACCAAATTTTTTCATTTCAAGAGCAAT
ATTGAATAAATAGTCATAACATTCACATTGTGTTTTTGCTGATTGCCATGATTTTCCCCA
AACATAAATGCCATGACGTCTTACTAGAACGGCAGACGTTCCTGGATATTCCTTTATTGC
GTTATATGAGCTCTCTTCCAAGTCTCTCTCTTGATTTGTATTTTCAATGATCGGAACTAC
AAGTTCCTCATCATATCTCAAATAACGATTTAATTCGTAATCGAAAATTTTACCTTAATC
ATTTCTTGATGAGTTATTTTAAATTCTTTTTCATAAAGCAATGTAGCCATAACTGCATTA
GGTGAGTGAGTATGAATTACAGAGCCTGCATTTCGCATTTTATACGCGATCATGAAGAGT
GGTGTACATTGAGATTTTTTCAATTTTTTATAATCAGGTGGTTTTACCAAATCATCACCA
TCCAAATTTTGAATAAATAAATCATCAATTTGAATTCTTTCTTTTTGAACACCAGAAGGC
GCAATATAAATTTCATCGTCTAATTTGATAGAAATACCCCCACCATTTTACCGGTAACCC
ATCCTAGATCATAGAATTGTTTGCAAAGATCTGGGATTAATTTTCTAGGATGTTCCTAAA
TTCTGATAAATCTTGATACATGTCGTGCATGAGTTTCTTATGATTAAGGACTGAGTTGTT
GC
>g12834.t8 Gene=g12834 Length=155
MGSPSDKEHCQKIAKHCNELGLNTEMRVSSAHKVTKGTLQIMSEYEGIIKNLVFITVAGR
SNGLGPVLSGNTSYPVINCPPIKSDTMNIDLWSSINLPSGLGCSTVIYPEAAALNAAQIL
GLSNFMIWSRLRVKMINNLISLKKADKELRGVKEA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g12834.t8 | Coils | Coil | Coil | 142 | 155 | - |
| 6 | g12834.t8 | Gene3D | G3DSA:3.40.50.7700 | - | 1 | 123 | 1.1E-45 |
| 2 | g12834.t8 | PANTHER | PTHR43599:SF3 | MULTIFUNCTIONAL PROTEIN ADE2 | 1 | 152 | 3.5E-75 |
| 3 | g12834.t8 | PANTHER | PTHR43599 | MULTIFUNCTIONAL PROTEIN ADE2 | 1 | 152 | 3.5E-75 |
| 1 | g12834.t8 | Pfam | PF00731 | AIR carboxylase | 1 | 134 | 3.2E-33 |
| 5 | g12834.t8 | SMART | SM01001 | AIRC_2 | 1 | 142 | 1.2E-20 |
| 4 | g12834.t8 | SUPERFAMILY | SSF52255 | N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) | 1 | 151 | 6.54E-35 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006189 | ‘de novo’ IMP biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
