General information for g12834.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Multifunctional protein ADE2.
Parent gene
- The parent gene g12834 is located on chr_1: 26473015..26477102 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12834 | g12834.t9 | TSS | g12834.t9 | 26471425 | 26471425 |
| chr_1 | g12834 | g12834.t9 | isoform | g12834.t9 | 26472389 | 26477102 |
| chr_1 | g12834 | g12834.t9 | exon | g12834.t9.exon1 | 26472389 | 26473105 |
| chr_1 | g12834 | g12834.t9 | cds | g12834.t9.CDS1 | 26472410 | 26473015 |
| chr_1 | g12834 | g12834.t9 | exon | g12834.t9.exon2 | 26477085 | 26477102 |
| chr_1 | g12834 | g12834.t9 | TTS | g12834.t9 | NA | NA |
Sequences
>g12834.t9 Gene=g12834 Length=735
CCTTCGGGTGATAAACGTTTGATGGTCGATAAGCAAGTATACAGAAATTTAACTACAGTT
ACAAGTAAAGATTTGGAAACTGTCAAAAGAAATTTCCAATGGGTTCATGATCAATTGTCT
GAAATTTTACCTAAAAATGATCATTTGGTTGTGATTATTATGGGTTCACCTTCTGATAAG
GAACACTGTCAAAAAATTGCCAAACATTGTAATGAACTTGGACTTAATACAGAAATGCGC
GTTTCTTCAGCACACAAAGTTACAAAGGGCACACTTCAAATCATGTCAGAATATGAAGGA
ATTATCAAAAATCTCGTCTTTATCACAGTTGCTGGTCGTTCAAACGGACTCGGACCAGTT
TTATCTGGCAACACATCTTATCCAGTGATTAACTGTCCACCAATCAAAAGTGATACCATG
AACATTGACTTGTGGTCTTCAATCAACTTGCCATCCGGTTTAGGATGTAGCACAGTAATC
TATCCAGAAGCCGCAGCACTCAATGCAGCTCAAATTTTGGGTCTCAGCAACTTCATGATT
TGGTCACGACTTAGAGTCAAGATGATTAATAATCTGATAAGCTTGAAAAAAGCTGATAAA
GAATTGCGTGGAGTCAAGGAAGCTTAAACAATGAATATCTTTTTATTTCCTTTTATAATT
GCCATAATTTAGAGCTATATTCTTTTATATTTTTTGGTCTTCAATAAAACATATTTTTAT
AATTTAAAAAATAAA
>g12834.t9 Gene=g12834 Length=201
MVDKQVYRNLTTVTSKDLETVKRNFQWVHDQLSEILPKNDHLVVIIMGSPSDKEHCQKIA
KHCNELGLNTEMRVSSAHKVTKGTLQIMSEYEGIIKNLVFITVAGRSNGLGPVLSGNTSY
PVINCPPIKSDTMNIDLWSSINLPSGLGCSTVIYPEAAALNAAQILGLSNFMIWSRLRVK
MINNLISLKKADKELRGVKEA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g12834.t9 | Gene3D | G3DSA:3.40.50.7700 | - | 40 | 169 | 0.00000 |
| 4 | g12834.t9 | Hamap | MF_02045 | Phosphoribosylaminoimidazole carboxylase [purE]. | 41 | 196 | 34.57767 |
| 2 | g12834.t9 | PANTHER | PTHR43599:SF3 | MULTIFUNCTIONAL PROTEIN ADE2 | 2 | 198 | 0.00000 |
| 3 | g12834.t9 | PANTHER | PTHR43599 | MULTIFUNCTIONAL PROTEIN ADE2 | 2 | 198 | 0.00000 |
| 1 | g12834.t9 | Pfam | PF00731 | AIR carboxylase | 43 | 180 | 0.00000 |
| 6 | g12834.t9 | SMART | SM01001 | AIRC_2 | 41 | 188 | 0.00000 |
| 5 | g12834.t9 | SUPERFAMILY | SSF52255 | N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) | 42 | 197 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006189 | ‘de novo’ IMP biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
