Gene loci information

Transcript annotation

  • This transcript has been annotated as Dynamin-1-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12848 g12848.t1 TSS g12848.t1 26514484 26514484
chr_1 g12848 g12848.t1 isoform g12848.t1 26514722 26516728
chr_1 g12848 g12848.t1 exon g12848.t1.exon1 26514722 26514833
chr_1 g12848 g12848.t1 cds g12848.t1.CDS1 26514722 26514833
chr_1 g12848 g12848.t1 exon g12848.t1.exon2 26514896 26516332
chr_1 g12848 g12848.t1 cds g12848.t1.CDS2 26514896 26516332
chr_1 g12848 g12848.t1 exon g12848.t1.exon3 26516394 26516728
chr_1 g12848 g12848.t1 cds g12848.t1.CDS3 26516394 26516728
chr_1 g12848 g12848.t1 TTS g12848.t1 26516947 26516947

Sequences

>g12848.t1 Gene=g12848 Length=1884
ATGAAAGAATTATTCAGTGTCATTAATAAACTTCAAGATGTGTTCAACACACTTAATTTA
CCAAACAGCATTCAATTGCCACAAATTGTTATGCTTGGATCACAATCAACAGGCAAAAGT
TCTGTGCTTGAATCGATTGTTCGAAGACCATTTTTGCCTCGTGGATCTGGAATTGTGACT
CGTTGTCCATTAGTATTGCAATTGATTGAGTGTCCACTTGATGATCGCAAATATCGACGT
GAAAATAATGGAACAATTGATGTCAAAGAATGGGGTGAATTTTTGCATGCTAAGGATAGA
ATTTTTACTGATTTTGATGAAATACGAAAAGAGATTGAACATCAAACAGATCTTATTGCT
GGAAGAAACAAAGGCATATGTGCAGAACCGATCAATTTAAAAATTTTCTCACCAGAAGTT
GTCAATTTAACTCTTGTCGATTTGCCTGGTATTACAAAAGTTTCTGTTGGTGATCAACCG
GAAAATATTGAAGATCAAATCAAGAGTCTTGTTATGGAATACATCAAAAATCCAAATTCA
ATCATTTTGAGTGTTAGTGCAGCAAATGTTGATTTGGCAACAAGTGAAAGTTTGAAATAT
GCAAAAGAAGTCGATCCTGATGGCAAACGTACATTAGCTGTTTTGACAAAAATTGATTTG
ATGGATGCAGGTACTGATGCGAATGAAATGCTTACTGGTGCAGTCATTCCTGTAAAACTT
GGTATTGTTGGTGTCATCAATCGCTCACAACTTGATATCAAGAATAATAAAACTATCGCT
GAGCAACTTGAAGATGAAAAAGAGTATTTTGCCAAAAATTATAAGAAAATTGCAAGTTAT
AATGGAATTCCTTATCTTGAGCAACGTTTAAGCAAGTTATTGATGAACCATATTTACGAA
TGTTTGCCAAATCTCAAGAAGGAAGTTCAAATGAAACTAGTTGAATGGCAAAACATTTTC
GATCAATGTGGTGAAGAACTCACAAATCCTGATAAAATTTTTATGAAGATTATCACAAGT
ATTACAAACGATTTTCGGGGTAGCATTGATGGCACAACATTAAAACTCGAACGCAATGCT
AAAAACGTTTTTGGTGGACCAGCTATGCGAAAAGTTTTTGATGAGATTTTTGCAAAAGAA
ATTGAGAAAATAGAGCCTCAAATTTCAAAGCAAGATATTATTGTCTACATGAATCACAGT
GGTGGACCAAGACCAGATGTTTTTGCACCTGAAAAGTTGTTTGAAAAACTCATAAAAGAG
AACATTGAGCGTTTGCAAGCTCCATCGCTCGACTGCTTGCAACACATTCATAATGAAATC
GATAAAGTCCTCAAAATGATTCTTAAAAATAATTTCGAGTTGAATCGTTTTCCAAAGTTG
GCAGGAAGAATCAAATATATGCTTATTGAATTTTTGAATGAGCGTTTACCAGAAACAGAA
AGTCACCTAAAATATTTGATCAAAGCTGAGTTGACATCTATCAATAAGAATCATCCAGAG
TTTTCAATTGAAGAAACATTCAAGGAATTTGAAATTGAAGAAAAAGGAGATCACATGTAT
CAACTTTTGGACGCAGCAAAAGTAGTTTTCAATCAAAAGAAAATTAAGCGCCATGCTGAA
ATCATTGAATCTCTTGTCAACAATTATTTTCCAATCGTAAAGAAAACTGTGCAAGATTTA
ACTCCCAAAATCATCATGCTTTCAATGGTCAATGACATGTGTGACAATATTGATAACAAG
TTATTGGTTTTGTATAAAGACATTCATGATTTAATGAAGGAGTCTAAAGATAACACTGAT
AAACGTAATGAAGCAAAAGATATGTTAAAAGCTCTAAAAATTGCTGATTCAACTATAAAT
CAAGTTTATGAAAGTGAAATTTAA

>g12848.t1 Gene=g12848 Length=627
MKELFSVINKLQDVFNTLNLPNSIQLPQIVMLGSQSTGKSSVLESIVRRPFLPRGSGIVT
RCPLVLQLIECPLDDRKYRRENNGTIDVKEWGEFLHAKDRIFTDFDEIRKEIEHQTDLIA
GRNKGICAEPINLKIFSPEVVNLTLVDLPGITKVSVGDQPENIEDQIKSLVMEYIKNPNS
IILSVSAANVDLATSESLKYAKEVDPDGKRTLAVLTKIDLMDAGTDANEMLTGAVIPVKL
GIVGVINRSQLDIKNNKTIAEQLEDEKEYFAKNYKKIASYNGIPYLEQRLSKLLMNHIYE
CLPNLKKEVQMKLVEWQNIFDQCGEELTNPDKIFMKIITSITNDFRGSIDGTTLKLERNA
KNVFGGPAMRKVFDEIFAKEIEKIEPQISKQDIIVYMNHSGGPRPDVFAPEKLFEKLIKE
NIERLQAPSLDCLQHIHNEIDKVLKMILKNNFELNRFPKLAGRIKYMLIEFLNERLPETE
SHLKYLIKAELTSINKNHPEFSIEETFKEFEIEEKGDHMYQLLDAAKVVFNQKKIKRHAE
IIESLVNNYFPIVKKTVQDLTPKIIMLSMVNDMCDNIDNKLLVLYKDIHDLMKESKDNTD
KRNEAKDMLKALKIADSTINQVYESEI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g12848.t1 CDD cd08771 DLP_1 24 303 2.4607E-131
17 g12848.t1 Coils Coil Coil 246 266 -
15 g12848.t1 Gene3D G3DSA:3.40.50.300 - 1 323 5.5E-182
16 g12848.t1 Gene3D G3DSA:1.20.120.1240 - 324 504 5.5E-182
4 g12848.t1 PANTHER PTHR11566:SF39 DYNAMIN-1-LIKE PROTEIN 1 518 3.7E-180
6 g12848.t1 PANTHER PTHR11566 DYNAMIN 1 518 3.7E-180
5 g12848.t1 PANTHER PTHR11566:SF39 DYNAMIN-1-LIKE PROTEIN 534 625 3.7E-180
7 g12848.t1 PANTHER PTHR11566 DYNAMIN 534 625 3.7E-180
10 g12848.t1 PRINTS PR00195 Dynamin signature 26 44 3.4E-56
12 g12848.t1 PRINTS PR00195 Dynamin signature 51 68 3.4E-56
9 g12848.t1 PRINTS PR00195 Dynamin signature 137 154 3.4E-56
8 g12848.t1 PRINTS PR00195 Dynamin signature 187 205 3.4E-56
13 g12848.t1 PRINTS PR00195 Dynamin signature 206 222 3.4E-56
11 g12848.t1 PRINTS PR00195 Dynamin signature 229 248 3.4E-56
3 g12848.t1 Pfam PF00350 Dynamin family 29 218 3.8E-49
2 g12848.t1 Pfam PF01031 Dynamin central region 229 504 2.6E-71
1 g12848.t1 Pfam PF02212 Dynamin GTPase effector domain 536 622 7.6E-19
21 g12848.t1 ProSitePatterns PS00410 Dynamin-type guanine nucleotide-binding (G) domain signature. 52 61 -
22 g12848.t1 ProSiteProfiles PS51718 Dynamin-type guanine nucleotide-binding (G) domain profile. 23 303 57.12
23 g12848.t1 ProSiteProfiles PS51388 GED domain profile. 539 627 17.191
20 g12848.t1 SMART SM00053 dynamin_3 1 256 2.2E-110
19 g12848.t1 SMART SM00302 GED_2 534 622 4.6E-14
14 g12848.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1 310 8.3E-72

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF
GO:0016559 peroxisome fission BP
GO:0003924 GTPase activity MF
GO:0000266 mitochondrial fission BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values