Gene loci information

Transcript annotation

  • This transcript has been annotated as Dynamin-1-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12848 g12848.t2 isoform g12848.t2 26514484 26515378
chr_1 g12848 g12848.t2 TSS g12848.t2 26514484 26514484
chr_1 g12848 g12848.t2 exon g12848.t2.exon1 26514484 26514601
chr_1 g12848 g12848.t2 exon g12848.t2.exon2 26514716 26514833
chr_1 g12848 g12848.t2 cds g12848.t2.CDS1 26514722 26514833
chr_1 g12848 g12848.t2 exon g12848.t2.exon3 26514896 26515378
chr_1 g12848 g12848.t2 cds g12848.t2.CDS2 26514896 26515377
chr_1 g12848 g12848.t2 TTS g12848.t2 NA NA

Sequences

>g12848.t2 Gene=g12848 Length=719
ACATTTTCATGAGCTAATTTTGTTCGAAGTTTTCTGTTGTTAAAATAATTTAATATTAAA
TATATTTAATCGCATTAAATATTTATTTTTGTTTCCTAAACTTGTTGTAAAAAGAAATAT
TAATATGAAAGAATTATTCAGTGTCATTAATAAACTTCAAGATGTGTTCAACACACTTAA
TTTACCAAACAGCATTCAATTGCCACAAATTGTTATGCTTGGATCACAATCAACAGGCAA
AAGTTCTGTGCTTGAATCGATTGTTCGAAGACCATTTTTGCCTCGTGGATCTGGAATTGT
GACTCGTTGTCCATTAGTATTGCAATTGATTGAGTGTCCACTTGATGATCGCAAATATCG
ACGTGAAAATAATGGAACAATTGATGTCAAAGAATGGGGTGAATTTTTGCATGCTAAGGA
TAGAATTTTTACTGATTTTGATGAAATACGAAAAGAGATTGAACATCAAACAGATCTTAT
TGCTGGAAGAAACAAAGGCATATGTGCAGAACCGATCAATTTAAAAATTTTCTCACCAGA
AGTTGTCAATTTAACTCTTGTCGATTTGCCTGGTATTACAAAAGTTTCTGTTGGTGATCA
ACCGGAAAATATTGAAGATCAAATCAAGAGTCTTGTTATGGAATACATCAAAAATCCAAA
TTCAATCATTTTGAGTGTTAGTGCAGCAAATGTTGATTTGGCAACAAGTGAAAGTTTGA

>g12848.t2 Gene=g12848 Length=198
MKELFSVINKLQDVFNTLNLPNSIQLPQIVMLGSQSTGKSSVLESIVRRPFLPRGSGIVT
RCPLVLQLIECPLDDRKYRRENNGTIDVKEWGEFLHAKDRIFTDFDEIRKEIEHQTDLIA
GRNKGICAEPINLKIFSPEVVNLTLVDLPGITKVSVGDQPENIEDQIKSLVMEYIKNPNS
IILSVSAANVDLATSESL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g12848.t2 CDD cd08771 DLP_1 24 198 2.31854E-87
9 g12848.t2 Gene3D G3DSA:3.40.50.300 - 1 198 5.2E-75
2 g12848.t2 PANTHER PTHR11566:SF39 DYNAMIN-1-LIKE PROTEIN 1 198 1.1E-78
3 g12848.t2 PANTHER PTHR11566 DYNAMIN 1 198 1.1E-78
5 g12848.t2 PRINTS PR00195 Dynamin signature 26 44 1.3E-36
6 g12848.t2 PRINTS PR00195 Dynamin signature 51 68 1.3E-36
4 g12848.t2 PRINTS PR00195 Dynamin signature 137 154 1.3E-36
7 g12848.t2 PRINTS PR00195 Dynamin signature 187 198 1.3E-36
1 g12848.t2 Pfam PF00350 Dynamin family 29 197 1.7E-42
11 g12848.t2 ProSitePatterns PS00410 Dynamin-type guanine nucleotide-binding (G) domain signature. 52 61 -
13 g12848.t2 ProSiteProfiles PS51718 Dynamin-type guanine nucleotide-binding (G) domain profile. 23 198 45.041
12 g12848.t2 SMART SM00053 dynamin_3 1 198 1.3E-55
8 g12848.t2 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1 196 1.98E-46

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF
GO:0016559 peroxisome fission BP
GO:0003924 GTPase activity MF
GO:0000266 mitochondrial fission BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values