General information for g12848.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12848 is located on chr_1: 26515975..26516728 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12848 | g12848.t3 | isoform | g12848.t3 | 26515975 | 26516728 |
| chr_1 | g12848 | g12848.t3 | exon | g12848.t3.exon1 | 26515975 | 26516332 |
| chr_1 | g12848 | g12848.t3 | cds | g12848.t3.CDS1 | 26516119 | 26516332 |
| chr_1 | g12848 | g12848.t3 | exon | g12848.t3.exon2 | 26516394 | 26516728 |
| chr_1 | g12848 | g12848.t3 | cds | g12848.t3.CDS2 | 26516394 | 26516728 |
| chr_1 | g12848 | g12848.t3 | TTS | g12848.t3 | 26516947 | 26516947 |
| chr_1 | g12848 | g12848.t3 | TSS | g12848.t3 | NA | NA |
Sequences
>g12848.t3 Gene=g12848 Length=693
AATCACAGTGGTGGACCAAGACCAGATGTTTTTGCACCTGAAAAGTTGTTTGAAAAACTC
ATAAAAGAGAACATTGAGCGTTTGCAAGCTCCATCGCTCGACTGCTTGCAACACATTCAT
AATGAAATCGATAAAGTCCTCAAAATGATTCTTAAAAATAATTTCGAGTTGAATCGTTTT
CCAAAGTTGGCAGGAAGAATCAAATATATGCTTATTGAATTTTTGAATGAGCGTTTACCA
GAAACAGAAAGTCACCTAAAATATTTGATCAAAGCTGAGTTGACATCTATCAATAAGAAT
CATCCAGAGTTTTCAATTGAAGAAACATTCAAGGAATTTGAAATTGAAGAAAAAGGAGAT
CACATGTATCAACTTTTGGACGCAGCAAAAGTAGTTTTCAATCAAAAGAAAATTAAGCGC
CATGCTGAAATCATTGAATCTCTTGTCAACAATTATTTTCCAATCGTAAAGAAAACTGTG
CAAGATTTAACTCCCAAAATCATCATGCTTTCAATGGTCAATGACATGTGTGACAATATT
GATAACAAGTTATTGGTTTTGTATAAAGACATTCATGATTTAATGAAGGAGTCTAAAGAT
AACACTGATAAACGTAATGAAGCAAAAGATATGTTAAAAGCTCTAAAAATTGCTGATTCA
ACTATAAATCAAGTTTATGAAAGTGAAATTTAA
>g12848.t3 Gene=g12848 Length=182
MILKNNFELNRFPKLAGRIKYMLIEFLNERLPETESHLKYLIKAELTSINKNHPEFSIEE
TFKEFEIEEKGDHMYQLLDAAKVVFNQKKIKRHAEIIESLVNNYFPIVKKTVQDLTPKII
MLSMVNDMCDNIDNKLLVLYKDIHDLMKESKDNTDKRNEAKDMLKALKIADSTINQVYES
EI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g12848.t3 | Gene3D | G3DSA:1.20.120.1240 | - | 2 | 157 | 0.0000000 |
| 3 | g12848.t3 | PANTHER | PTHR11566:SF39 | DYNAMIN-1-LIKE PROTEIN | 7 | 73 | 0.0000000 |
| 5 | g12848.t3 | PANTHER | PTHR11566 | DYNAMIN | 7 | 73 | 0.0000000 |
| 4 | g12848.t3 | PANTHER | PTHR11566:SF39 | DYNAMIN-1-LIKE PROTEIN | 89 | 180 | 0.0000000 |
| 6 | g12848.t3 | PANTHER | PTHR11566 | DYNAMIN | 89 | 180 | 0.0000000 |
| 2 | g12848.t3 | Pfam | PF01031 | Dynamin central region | 7 | 59 | 0.0000002 |
| 1 | g12848.t3 | Pfam | PF02212 | Dynamin GTPase effector domain | 91 | 177 | 0.0000000 |
| 9 | g12848.t3 | ProSiteProfiles | PS51388 | GED domain profile. | 94 | 182 | 17.1910000 |
| 7 | g12848.t3 | SMART | SM00302 | GED_2 | 89 | 177 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
| GO:0016559 | peroxisome fission | BP |
| GO:0003924 | GTPase activity | MF |
| GO:0000266 | mitochondrial fission | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
