Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Heparan-alpha-glucosaminide N-acetyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12855 g12855.t2 TTS g12855.t2 26569336 26569336
chr_1 g12855 g12855.t2 isoform g12855.t2 26569421 26570353
chr_1 g12855 g12855.t2 exon g12855.t2.exon1 26569421 26570353
chr_1 g12855 g12855.t2 cds g12855.t2.CDS1 26569421 26570281
chr_1 g12855 g12855.t2 TSS g12855.t2 26571224 26571224

Sequences

>g12855.t2 Gene=g12855 Length=933
AGGTCAATTCTACTTTTCCTAATTGGACTTTGTATTTTTGCACAAGGAGTTATTTTCCGT
GAAGTCAGAATCATGAACGTTTTGCAGCGTTTTGCAATTTCTTATCTTGTCGTGTGTTTA
GTTCATGTTGCATTTACAAAAACGACTGAAGTCAAAACACCTCAATTATTAGATGATATT
TTGATTATTTGGAAAGAATGGATAGTTATCCTTGTAATTCTTGTAATTCATCTTGCAACA
GTTTTTGGAATAAAAATAGATGGCTGTGATCGTGGATATGTTGGTCCAGGAGGAATTCAT
GATGATATGAAAAATGCGTTATGCACTGGTGGACTTGTTCAATATATTGATGAAAAAATT
TTAACTGAAAATCATTTATTTCGTTGGGCTGATATCAGATCAATTTATGATGCTACAAAA
AGATTCGATCCTGAAGGACTTTACGGTTCATTGACATCAATTGTACATACAATGATAGGC
TTTCAATGTGGAATGACATTGATGACTTTTACAGGACATAAACAAAGAATCATTAGATGG
GTAATATGGGGCGCATTTATGGCAATATTGACAGCAATTCTAACATTTTGCAAAATTGAA
GATGCACCAATTCCAATTAACAAACAAATGTGGTCGCTTTCATTTGTTACACTAACATCA
GCAACATCGTTTTGGTTGCTTGCTCTAATTTATTTCCTTGTTGACGTGAAAAATTATTGC
GAAGATTTTTGGACAATTTTTCAATATCCTGGAATGAATGCGATAATTTTGTACATGGGA
AATGCTATTTTTAGCTCACATTGGCCATTTCATTTCTTTGTAGCTGACATGAATACACAT
TTTATATATTTACTGAAACATTGCTATACGGCTGCAATTTGGATTCTCGCAGCTCACATC
ATGTACCATAAAAAGTTTTTCTTTAATCTTTAA

>g12855.t2 Gene=g12855 Length=286
MNVLQRFAISYLVVCLVHVAFTKTTEVKTPQLLDDILIIWKEWIVILVILVIHLATVFGI
KIDGCDRGYVGPGGIHDDMKNALCTGGLVQYIDEKILTENHLFRWADIRSIYDATKRFDP
EGLYGSLTSIVHTMIGFQCGMTLMTFTGHKQRIIRWVIWGAFMAILTAILTFCKIEDAPI
PINKQMWSLSFVTLTSATSFWLLALIYFLVDVKNYCEDFWTIFQYPGMNAIILYMGNAIF
SSHWPFHFFVADMNTHFIYLLKHCYTAAIWILAAHIMYHKKFFFNL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g12855.t2 PANTHER PTHR31061 LD22376P 3 282 5.8E-68
2 g12855.t2 PANTHER PTHR31061:SF19 HEPARAN-ALPHA-GLUCOSAMINIDE N-ACETYLTRANSFERASE 3 282 5.8E-68
17 g12855.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 22 -
18 g12855.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 6 -
19 g12855.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 7 17 -
26 g12855.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 18 22 -
14 g12855.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 23 37 -
23 g12855.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 38 60 -
11 g12855.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 61 122 -
25 g12855.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 123 147 -
15 g12855.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 148 152 -
24 g12855.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 153 175 -
12 g12855.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 176 186 -
21 g12855.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 187 210 -
13 g12855.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 211 229 -
22 g12855.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 230 250 -
10 g12855.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 251 256 -
20 g12855.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 257 278 -
16 g12855.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 279 286 -
6 g12855.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 21 -
7 g12855.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 36 58 -
5 g12855.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 122 144 -
8 g12855.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 154 173 -
4 g12855.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 186 208 -
3 g12855.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 228 250 -
9 g12855.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 257 279 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005765 lysosomal membrane CC
GO:0015019 heparan-alpha-glucosaminide N-acetyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed