General information for g12855.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Heparan-alpha-glucosaminide N-acetyltransferase.
Parent gene
- The parent gene g12855 is located on chr_1: 26570404..26571213 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12855 | g12855.t3 | isoform | g12855.t3 | 26570404 | 26571213 |
| chr_1 | g12855 | g12855.t3 | exon | g12855.t3.exon1 | 26570404 | 26570765 |
| chr_1 | g12855 | g12855.t3 | cds | g12855.t3.CDS1 | 26570404 | 26570765 |
| chr_1 | g12855 | g12855.t3 | exon | g12855.t3.exon2 | 26570820 | 26571213 |
| chr_1 | g12855 | g12855.t3 | cds | g12855.t3.CDS2 | 26570820 | 26571213 |
| chr_1 | g12855 | g12855.t3 | TSS | g12855.t3 | 26571224 | 26571224 |
| chr_1 | g12855 | g12855.t3 | TTS | g12855.t3 | NA | NA |
Sequences
>g12855.t3 Gene=g12855 Length=756
ATGTCGTGGCTTGAACGCACTGACAGTCATTTTCGTGATTTAAATTTAAAAAGTTTGTGG
GTTGATGAAGCTTTTCTAAATATCAGTAATGGCATGAATTTGCCATTGTATTTGTATACA
CTTTCACCAGACTGTGTTAAATGTCCATTTCGTAAATTTAATGAGATTGCAGCAAATAAT
GACACAGTGATGAAAATAAAAGTTGCAAGAACACCACAAATGAAACTTTATTATAAAGAT
CATGAAAAATATATTTTCAATAATCAATCAATGGATGGAATTTATGCACATATTGAACCT
AAAATGGGACAATTTGGTGTTTATGATTGGATAATTAATGAAAATGAAGACAATGACTTT
GAAGTTGCTAAAGAACCAGTACCAATTTATTGGTCCATGCTTGTTGTTGCTGTAATCGTT
TTTGCATTCTATTGGTTCTGTAAAGGAGTTGATCGATTAATTTTATCTCGCTTTAAAAAC
ACAAACAAGAACACATCGATAAATGGACCACAAGTGAAAAAACGATTGAAAAGTTTAGAT
ATTTTTCGAGGGATTTCGATTGTTTTGATGATTTTTGTATGGTATGGTGCTGGTTTTTAT
TGGTGGTTGCAACATGCTGTTTGGAATGGACTGTTAGCTGCTGACATTGTTTTTCCATGG
TTCTTATTCATAATGGGCGTTTGCATACCAATTTCTATTAAATCACAACTCTCTAAGAAT
TTTGCGAAAATTAAAATCATTAAAAAAATTATCAAG
>g12855.t3 Gene=g12855 Length=252
MSWLERTDSHFRDLNLKSLWVDEAFLNISNGMNLPLYLYTLSPDCVKCPFRKFNEIAANN
DTVMKIKVARTPQMKLYYKDHEKYIFNNQSMDGIYAHIEPKMGQFGVYDWIINENEDNDF
EVAKEPVPIYWSMLVVAVIVFAFYWFCKGVDRLILSRFKNTNKNTSINGPQVKKRLKSLD
IFRGISIVLMIFVWYGAGFYWWLQHAVWNGLLAADIVFPWFLFIMGVCIPISIKSQLSKN
FAKIKIIKKIIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g12855.t3 | PANTHER | PTHR31061 | LD22376P | 147 | 251 | 1.1E-26 |
| 3 | g12855.t3 | PANTHER | PTHR31061:SF19 | HEPARAN-ALPHA-GLUCOSAMINIDE N-ACETYLTRANSFERASE | 147 | 251 | 1.1E-26 |
| 1 | g12855.t3 | Pfam | PF07786 | Protein of unknown function (DUF1624) | 175 | 241 | 9.6E-5 |
| 9 | g12855.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 128 | - |
| 11 | g12855.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 129 | 147 | - |
| 8 | g12855.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 148 | 180 | - |
| 13 | g12855.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 181 | 202 | - |
| 10 | g12855.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 203 | 207 | - |
| 12 | g12855.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 208 | 233 | - |
| 7 | g12855.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 234 | 252 | - |
| 6 | g12855.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 128 | 147 | - |
| 4 | g12855.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 181 | 203 | - |
| 5 | g12855.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 216 | 233 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005765 | lysosomal membrane | CC |
| GO:0015019 | heparan-alpha-glucosaminide N-acetyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed