General information for g12856.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein dj-1beta.
Parent gene
- The parent gene g12856 is located on chr_1: 26575420..26576116 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12856 | g12856.t1 | TSS | g12856.t1 | 26575380 | 26575380 |
| chr_1 | g12856 | g12856.t1 | isoform | g12856.t1 | 26575420 | 26576116 |
| chr_1 | g12856 | g12856.t1 | exon | g12856.t1.exon1 | 26575420 | 26575506 |
| chr_1 | g12856 | g12856.t1 | cds | g12856.t1.CDS1 | 26575420 | 26575506 |
| chr_1 | g12856 | g12856.t1 | exon | g12856.t1.exon2 | 26575565 | 26575786 |
| chr_1 | g12856 | g12856.t1 | cds | g12856.t1.CDS2 | 26575565 | 26575786 |
| chr_1 | g12856 | g12856.t1 | exon | g12856.t1.exon3 | 26575844 | 26576116 |
| chr_1 | g12856 | g12856.t1 | cds | g12856.t1.CDS3 | 26575844 | 26576116 |
| chr_1 | g12856 | g12856.t1 | TTS | g12856.t1 | NA | NA |
Sequences
>g12856.t1 Gene=g12856 Length=582
ATGACTAAAAAAGTGTTGCTGATAATGACAGCCGGTTCGGAAACTGTCGAAATTGTAGCG
CCAGTTGATACATTGAGAAGTTGTGGTCTTGATGTAACGATTGCATCGATTGAAGGTGAG
GAAGCTGTAAAAACTGCTGAAAGAATCTTGATTTTACCCGACGTGTCATTAAAGAATGTT
GATAAAGATGCCTATGATGCGATTGTATTGCCTGGAGGAACTTCTGGTTCACCAAATATG
TGCAAAAGTGAATTAGTTGGTGAAATTTTAAGACATCATCATAGTAAAGGAAAATTAATT
GGTGCAATTTGTATGGCACCAACTGTGCTACTTAAAAATGAAATCGGAATTGGCAGAAAA
GTGACAAGTTATCCAAAATCAAAAGAAGTTTTAGCTGAAAAATATGAATTTATTGAAGCA
CCTGTAGTACAAGATGGAAATATTGTGACCTCTCGCGGACCAGGAACTGTTTGGCAATTT
ACATTGAAAATTGCTGAAATTCTTGTTGGAATTGAAGAAACGAGAAGAGTTGCTGAAGTG
AATTTATTGACAGAGTTTCTTGATAAGAACGTTTTTAAATAA
>g12856.t1 Gene=g12856 Length=193
MTKKVLLIMTAGSETVEIVAPVDTLRSCGLDVTIASIEGEEAVKTAERILILPDVSLKNV
DKDAYDAIVLPGGTSGSPNMCKSELVGEILRHHHSKGKLIGAICMAPTVLLKNEIGIGRK
VTSYPKSKEVLAEKYEFIEAPVVQDGNIVTSRGPGTVWQFTLKIAEILVGIEETRRVAEV
NLLTEFLDKNVFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g12856.t1 | CDD | cd03135 | GATase1_DJ-1 | 5 | 168 | 0 |
| 5 | g12856.t1 | Gene3D | G3DSA:3.40.50.880 | - | 1 | 183 | 0 |
| 2 | g12856.t1 | PANTHER | PTHR48094:SF12 | PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1 | 4 | 179 | 0 |
| 3 | g12856.t1 | PANTHER | PTHR48094 | PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED | 4 | 179 | 0 |
| 1 | g12856.t1 | Pfam | PF01965 | DJ-1/PfpI family | 3 | 166 | 0 |
| 4 | g12856.t1 | SUPERFAMILY | SSF52317 | Class I glutamine amidotransferase-like | 3 | 182 | 0 |
| 6 | g12856.t1 | TIGRFAM | TIGR01383 | not_thiJ: DJ-1 family protein | 5 | 179 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed