General information for g12859.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Luciferin 4-monooxygenase.
Parent gene
- The parent gene g12859 is located on chr_1: 26581702..26583692 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12859 | g12859.t3 | isoform | g12859.t3 | 26580722 | 26583245 |
| chr_1 | g12859 | g12859.t3 | exon | g12859.t3.exon1 | 26580722 | 26580759 |
| chr_1 | g12859 | g12859.t3 | exon | g12859.t3.exon2 | 26581654 | 26582006 |
| chr_1 | g12859 | g12859.t3 | cds | g12859.t3.CDS1 | 26581702 | 26582006 |
| chr_1 | g12859 | g12859.t3 | exon | g12859.t3.exon3 | 26582060 | 26582377 |
| chr_1 | g12859 | g12859.t3 | cds | g12859.t3.CDS2 | 26582060 | 26582377 |
| chr_1 | g12859 | g12859.t3 | exon | g12859.t3.exon4 | 26582499 | 26582682 |
| chr_1 | g12859 | g12859.t3 | cds | g12859.t3.CDS3 | 26582499 | 26582682 |
| chr_1 | g12859 | g12859.t3 | exon | g12859.t3.exon5 | 26582737 | 26583245 |
| chr_1 | g12859 | g12859.t3 | cds | g12859.t3.CDS4 | 26582737 | 26582940 |
| chr_1 | g12859 | g12859.t3 | TSS | g12859.t3 | 26583721 | 26583721 |
| chr_1 | g12859 | g12859.t3 | TTS | g12859.t3 | NA | NA |
Sequences
>g12859.t3 Gene=g12859 Length=1402
ATGATCTTTCACATGCTTTCAATATTTCGAAGCCAACACTAATTTTTTCAACAACAAGTG
CGATTAAGAATGTAATTTCAACATGCAAAGATCTTGACTATGTGAAACAAATAATTTCAA
TTGATGAAATTAATTCAACCGAACTCTTATCATTGTCTGCTTTCATTCAAAAATTTTCAT
TTCCATTTTTCAACATTAATTCAATAATTTCCACTAAAGTTGACTTAAAACTACAAACTG
CAATAATTTTTCTATCAAGTGGTACAACTAGTGTTGCAAAAGGATGTGAAATTACTCAAT
ATAATATGGCCACATGCATCACTGCGTTTCAAAAGCGAATGAAATTTTTGAAGCAATTTT
CTGCTGATGGAAAAATTATGACATTGAACATTACACCATGGTTCCACGTGATGGGAATGG
TCAATATATTTTCCATTTTAATGTGTGATGATATATCAACTGTTAGTTTATCTAAATTTG
AACCAAAAGTATTTTTTGGATGTATTGAAAAATATCGAGTGATTTCAACAAGTATTCCAC
CACCAATTGTGGTCTTTCTTTCGAAAACTCCATTGCTGAATGATTACGATTTATCTAGTT
TAAAAGCAATTTTTTGTGGTGCAGCTGCATTAAAGAAAGAAACTGAAGATTTAGTTAAAA
GTCGATTCAAAAATAAATTGACAATTCTTCAAGGTTACGGAATGACAGAAACAACAGCAG
GAATAATTTATGGAGTTTATGGGAAAGAAGTTCCTGGCTCAACTGGAATGCTTGAAGAAG
GAATTTATGCCAAAGTTATTGATGAAGAAGGAAAGTCTTTGAAACCGAATCAAATAGGAG
AAATTTGTGTAAAAGGAAATCGTATAATGAAAGGATATTTGAATGATCCAAAATCAACTG
CTGAAACAATTGATAAAGATGGTTGGCTGCATACTGGAGACTTGGGATATTACAATGAAG
ATCTTCAATTCTTTGTTGTTGATCGATTGAAAGAATTGATTAAATACAAAGGTTTTCAAG
TTGCACCAGCTGAACTTGAGGGACTTTTACTTTCTCATCCTAAAATCAAAGATGTTGGAG
TCATTGGAATTCCTGACGAAACTGCTGGTGAACTTCCGTTTGCATTTGTCGTTAAACAAG
ATGGTATTGAGGTGACAGCAAAAGAAGTCAAAGAATTTGTTAAAAAAAATGCAAGCAATG
CAAAATGGTTAAGAGGTGGTGTGAAATTCATCCCTGAAATTCCCAAAAATCCAAGTGGAA
AAATTTTACGAAGAGAACTGAAAAATTTGTATAAAAACTTCAAAGCAAAATTGTAAATAT
TTTTTAAATTTTATTGACAGTAAAAAAGTAAAAATTACAAAATCATAAAAATAAAATTAT
TTCCTTTAAATTTAAAAAAATC
>g12859.t3 Gene=g12859 Length=336
MATCITAFQKRMKFLKQFSADGKIMTLNITPWFHVMGMVNIFSILMCDDISTVSLSKFEP
KVFFGCIEKYRVISTSIPPPIVVFLSKTPLLNDYDLSSLKAIFCGAAALKKETEDLVKSR
FKNKLTILQGYGMTETTAGIIYGVYGKEVPGSTGMLEEGIYAKVIDEEGKSLKPNQIGEI
CVKGNRIMKGYLNDPKSTAETIDKDGWLHTGDLGYYNEDLQFFVVDRLKELIKYKGFQVA
PAELEGLLLSHPKIKDVGVIGIPDETAGELPFAFVVKQDGIEVTAKEVKEFVKKNASNAK
WLRGGVKFIPEIPKNPSGKILRRELKNLYKNFKAKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g12859.t3 | Gene3D | G3DSA:3.40.50.980 | - | 2 | 142 | 0 |
| 8 | g12859.t3 | Gene3D | G3DSA:2.30.38.10 | Luciferase; Domain 3 | 143 | 227 | 0 |
| 7 | g12859.t3 | Gene3D | G3DSA:3.30.300.30 | - | 228 | 335 | 0 |
| 3 | g12859.t3 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 17 | 332 | 0 |
| 4 | g12859.t3 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 17 | 332 | 0 |
| 2 | g12859.t3 | Pfam | PF00501 | AMP-binding enzyme | 22 | 234 | 0 |
| 1 | g12859.t3 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 243 | 319 | 0 |
| 5 | g12859.t3 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 20 | 332 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed