Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable cytochrome P450 6a13.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12864 g12864.t2 TTS g12864.t2 26631534 26631534
chr_1 g12864 g12864.t2 isoform g12864.t2 26631566 26632196
chr_1 g12864 g12864.t2 exon g12864.t2.exon1 26631566 26631733
chr_1 g12864 g12864.t2 cds g12864.t2.CDS1 26631566 26631733
chr_1 g12864 g12864.t2 exon g12864.t2.exon2 26631793 26632196
chr_1 g12864 g12864.t2 cds g12864.t2.CDS2 26631793 26632152
chr_1 g12864 g12864.t2 TSS g12864.t2 NA NA

Sequences

>g12864.t2 Gene=g12864 Length=572
CTTTGATTTCTTTTGCTTTGTATGAATTGGCTTTAAACTCAGAAATGCAAGATCGATTGA
GAGATGAAATTTTAAATGGAATAAATGAAAATGATGGAAAAATTACTTATGAAATGCTTT
ATGGATTTGAATATCTTGACATGGTTATAAACGAAACTTTAAGAAAACTTCCATCAATTC
CACACATTTTTAGAAAATGCACAAAAGATTTTGTAGTGCCAAATACGAATCTTGTTATTC
CAAAAGGAACTCAAGTTATTATTAATAATTACTCACTACAACATGATCCAGAATATTTTC
CAAATCCTGAAAAATTTGATCCAGAAAGATTCAACAGTGAAAATAAAAAGAAAATTAATC
CGTATACAAATATGCCATTTGCACTTGGTAATCGTAATTGTTTGGGCGAGCGCTTTGGAT
TAATGCAAGCTAAAATTGGCGTAGTAAAAATGATTAAAAATTTTATTTTTACACCATGTA
ATAAAACTACTATTCCAATGAAATTTGTTCCTAATCAATTTTTCTTAACTCCAGTTGGTG
GAATTCAATTATGCATCAAAAAAATTCATTAA

>g12864.t2 Gene=g12864 Length=175
MQDRLRDEILNGINENDGKITYEMLYGFEYLDMVINETLRKLPSIPHIFRKCTKDFVVPN
TNLVIPKGTQVIINNYSLQHDPEYFPNPEKFDPERFNSENKKKINPYTNMPFALGNRNCL
GERFGLMQAKIGVVKMIKNFIFTPCNKTTIPMKFVPNQFFLTPVGGIQLCIKKIH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g12864.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 175 0.0e+00
2 g12864.t2 PANTHER PTHR24292 CYTOCHROME P450 1 171 0.0e+00
6 g12864.t2 PRINTS PR00463 E-class P450 group I signature 32 50 0.0e+00
9 g12864.t2 PRINTS PR00385 P450 superfamily signature 33 44 2.5e-05
3 g12864.t2 PRINTS PR00463 E-class P450 group I signature 74 98 0.0e+00
5 g12864.t2 PRINTS PR00463 E-class P450 group I signature 109 119 0.0e+00
8 g12864.t2 PRINTS PR00385 P450 superfamily signature 110 119 2.5e-05
4 g12864.t2 PRINTS PR00463 E-class P450 group I signature 119 142 0.0e+00
7 g12864.t2 PRINTS PR00385 P450 superfamily signature 119 130 2.5e-05
1 g12864.t2 Pfam PF00067 Cytochrome P450 2 170 0.0e+00
10 g12864.t2 SUPERFAMILY SSF48264 Cytochrome P450 2 172 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed