Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 6a13.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12864 g12864.t6 TTS g12864.t6 26631534 26631534
chr_1 g12864 g12864.t6 isoform g12864.t6 26631566 26633456
chr_1 g12864 g12864.t6 exon g12864.t6.exon1 26631566 26632517
chr_1 g12864 g12864.t6 cds g12864.t6.CDS1 26631715 26632517
chr_1 g12864 g12864.t6 exon g12864.t6.exon2 26632817 26633456
chr_1 g12864 g12864.t6 cds g12864.t6.CDS2 26632817 26632976
chr_1 g12864 g12864.t6 TSS g12864.t6 26633479 26633479

Sequences

>g12864.t6 Gene=g12864 Length=1592
ATGAGCACAACTTTAGTAGCATTGATCATCATTTTATTTAGTGTTGCTTACATTTTTGTA
AAGCGACAATTTAGTTATTGGTCACGAAGAGGATTTTTTCAAGCTGACGCTTCGTTTCCT
TTTGGATCAATTAAAGGAGCAAATTTTTCTATAACATTGACTGAAAAATTGGATGAAATT
TATAAACAATTCAAAGGAAAAGCTTCTGTCGTAGGTTTTTATAATTTCTTAGGAGCATCA
ATTTTACCTATAGATCCAGAAATTATAAAACACATTTTTGTCAAAGATTTTGCTTCATTT
CATGATCGAGGATTTTTTTATAATAAAAGAGATGATCCGCTTACTAATAAGTTTGTATTT
TAATTGAGTTTCGTTCAAAATTAATTTAATGACATTATCAATTTCAGCATTCTTTCTATC
AAAGGTCAAGAATGGAAAGATCGTAGGGCTAAATTCACTCCTGTATTTACTTCAGCTAAA
ATGAAGCAAATGTATGAAATTATTGAAGAAATTAGTGACAAATTTGCTCTTAAACTCGGT
GAAAGTTTAAAAGACTCAAATATTCAAGACATGAGAATTTGGGCACGAAGATTTACAAAT
GATAATATTGGTAGTACTGTGTTTGGAATTGACGCAAAATGTCTTGAAGATATAAATTCT
GATTTGATGGTGTTTGGTCAAAAATCCCTTAACATGACACTTGCGGGTGCATTTAAATTT
GCATTTGGTTCAACTTTTCCTGAAATTGCAAGATTTTTACGATTTAAAATTCTTGACAAA
GATTCACATGAGTTTTTCCTAAATACATTTCTTCAAACTTTAGAATACCGAAGAAATAAT
AAGCAAATTGTTCGTCATGATTTTGTGTCAATGCTGTTAGAATTATCGGACCAATTACCA
CCAATTGATCTTGCTGCTGAAGCCACAATAATGTATTTAGCTGGTTTTGAAACAAGTGCA
ACTTTGATTTCTTTTGCTTTGTATGAATTGGCTTTAAACTCAGAAATGCAAGATCGATTG
AGAGATGAAATTTTAAATGGAATAAATGAAAATGATGGAAAAATTACTTATGAAATGCTT
TATGGATTTGAATATCTTGACATGGTTATAAACGAAACTTTAAGAAAACTTCCATCAATT
CCACACATTTTTAGAAAATGCACAAAAGATTTTGTAGTGCCAAATACGAATCTTGTTATT
CCAAAAGGAACTCAAGTTATTATTAATAATTACTCACTACAACATGATCCAGAATATTTT
CCAAATCCTGAAAAATTTGATCCAGAAAGATTCAACAGTGAAAATAAAAAGAAAATTAAT
CCGTATACAAATATGCCATTTGCACTTGGTAATCGTAATTGTTTGGTAAGAATTTTCACT
TTTATTAAATTCAATTTATGTGTAAAGTTTTCTAATTTTTATAGGGCGAGCGCTTTGGAT
TAATGCAAGCTAAAATTGGCGTAGTAAAAATGATTAAAAATTTTATTTTTACACCATGTA
ATAAAACTACTATTCCAATGAAATTTGTTCCTAATCAATTTTTCTTAACTCCAGTTGGTG
GAATTCAATTATGCATCAAAAAAATTCATTAA

>g12864.t6 Gene=g12864 Length=320
MKQMYEIIEEISDKFALKLGESLKDSNIQDMRIWARRFTNDNIGSTVFGIDAKCLEDINS
DLMVFGQKSLNMTLAGAFKFAFGSTFPEIARFLRFKILDKDSHEFFLNTFLQTLEYRRNN
KQIVRHDFVSMLLELSDQLPPIDLAAEATIMYLAGFETSATLISFALYELALNSEMQDRL
RDEILNGINENDGKITYEMLYGFEYLDMVINETLRKLPSIPHIFRKCTKDFVVPNTNLVI
PKGTQVIINNYSLQHDPEYFPNPEKFDPERFNSENKKKINPYTNMPFALGNRNCLVRIFT
FIKFNLCVKFSNFYRASALD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g12864.t6 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 308 0
2 g12864.t6 PANTHER PTHR24292 CYTOCHROME P450 1 303 0
4 g12864.t6 PRINTS PR00463 E-class P450 group I signature 143 160 0
9 g12864.t6 PRINTS PR00385 P450 superfamily signature 154 171 0
7 g12864.t6 PRINTS PR00463 E-class P450 group I signature 163 189 0
6 g12864.t6 PRINTS PR00463 E-class P450 group I signature 207 225 0
10 g12864.t6 PRINTS PR00385 P450 superfamily signature 208 219 0
3 g12864.t6 PRINTS PR00463 E-class P450 group I signature 249 273 0
5 g12864.t6 PRINTS PR00463 E-class P450 group I signature 284 294 0
8 g12864.t6 PRINTS PR00385 P450 superfamily signature 285 294 0
1 g12864.t6 Pfam PF00067 Cytochrome P450 3 295 0
11 g12864.t6 SUPERFAMILY SSF48264 Cytochrome P450 1 295 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed