Gene loci information

Transcript annotation

  • This transcript has been annotated as E3 ubiquitin-protein ligase highwire.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12888 g12888.t1 TSS g12888.t1 26727523 26727523
chr_1 g12888 g12888.t1 isoform g12888.t1 26727734 26735610
chr_1 g12888 g12888.t1 exon g12888.t1.exon1 26727734 26727795
chr_1 g12888 g12888.t1 cds g12888.t1.CDS1 26727734 26727795
chr_1 g12888 g12888.t1 exon g12888.t1.exon2 26727859 26727895
chr_1 g12888 g12888.t1 cds g12888.t1.CDS2 26727859 26727895
chr_1 g12888 g12888.t1 exon g12888.t1.exon3 26728130 26728396
chr_1 g12888 g12888.t1 cds g12888.t1.CDS3 26728130 26728396
chr_1 g12888 g12888.t1 exon g12888.t1.exon4 26728462 26728570
chr_1 g12888 g12888.t1 cds g12888.t1.CDS4 26728462 26728570
chr_1 g12888 g12888.t1 exon g12888.t1.exon5 26728635 26730345
chr_1 g12888 g12888.t1 cds g12888.t1.CDS5 26728635 26730345
chr_1 g12888 g12888.t1 exon g12888.t1.exon6 26730405 26730496
chr_1 g12888 g12888.t1 cds g12888.t1.CDS6 26730405 26730496
chr_1 g12888 g12888.t1 exon g12888.t1.exon7 26730557 26732809
chr_1 g12888 g12888.t1 cds g12888.t1.CDS7 26730557 26732809
chr_1 g12888 g12888.t1 exon g12888.t1.exon8 26732873 26735410
chr_1 g12888 g12888.t1 cds g12888.t1.CDS8 26732873 26735410
chr_1 g12888 g12888.t1 exon g12888.t1.exon9 26735474 26735610
chr_1 g12888 g12888.t1 cds g12888.t1.CDS9 26735474 26735610
chr_1 g12888 g12888.t1 TTS g12888.t1 NA NA

Sequences

>g12888.t1 Gene=g12888 Length=7206
ATGTTAAATGAGGATTTATTTGTGGATTTCTATTCCATGTTCATCCATAGTTATGATAAT
TCGAAGAAAAATAAGGAAAAAGGAAAGGACAAAGGAAAAATTTCATCGGAAAGTCACGAA
GAAAGCGGAATTGCTTCACCAATTGCATTTGAAATATCTTCGAATGCATCGAAATTTGCT
GCTTATTCTGCAATTCGCTCATTAGTGCTTGAACATGAAACAAAATATAACACATTATCT
AAATTGGAAAATAAATTAAAATCTATTGAACATCAAACATCAAGAAGTAAAAGTGAAGAT
GATGGTAGTGAATGTAAAATTATTGATGCATTGATAAGGAATGAAGCAAAAATTAGTGTT
CCATATATTGTATCTGCGGGAATTCAAACTTTGTTTGACATCATTTCCGAGACAAAGCAT
CAACATCCTGTTATATGTTCGAAAGCTCTGTCATCTCTTTTTGATATATTCCAAGGACAT
GATCCAGAAAGCTTTAAATCAGAACCAGATGCTTTATTTCAATCCCTTTATGATTTATTA
CTCGATTTGGCAACTTTTAATGGTGCAAGTCCACAAAAATCTGCAGATTATAATGATGAA
AAGAAAAATTGGAGTGCAATAAGTTGTTCGGTTTTATTGGCATTATGTGTTGCAAGAGGT
GATACTGGCAAAATTATAAAAGCAATAGCATCAATTCTTATGTCAAGTAATCCCGTAAAT
CAATCAATTAAGCTTCCCGAAATTCTAATTAAACTTCAAAAGAGCGTTGAATGTGCTGCT
CTTGGTCGTCCTGAAAGACCATCATTTTTCGAATACGGAATACCACAAGAAAGTTTAATT
GATGAATTTCATATAAAAAATATCACTGTTGATGTATCAACTTCCTCCTCAATTGCTTCA
GATGGAAAATTTCTTTATATTCTTCATGGTAAGAGTTTATATAAAGTTGGTTCTGGATAT
AATAGCACTACAAAAGGTTTAATCTATAAGATGAACAAAGATTTCACTAAAGATAAACGC
GGTTGGATTGGATATTGTCATGATAAACTTTATTACAAGAAAATGTCAAAGCGCAATGTC
GAGAACTTTGTTGTAATTGATCGTGATTCATTGACATTTCAAAGTCCTCTTCAATTATCA
TCAAAAACTCTTAAAAAAGATGCTGTAAACTATACACTCTACTCAGACGGTGAAACTATC
AATGCGATAAGTGCAGTAAAAGATGATAATTTTGTGATTAAAGAAATTATCTCAAGCAAT
GACTTTTCCTTTGATCTAACATTAAATTTAGCAAAAAGAAGTTTTAGAACTTATGGATAT
ACACCATTTGAGGAAGAAATTTTAAATAATGCACAACTACAGAAAATTCAATCATCTTAT
AACTGTTTTGTGCCAGCATTGCCTGATGATTCTGAAATTAGTGGAATTGTATCAGGCAAA
GAGTTTGGTTTAGTAATGACTTCAAATAACAAAGTTTATTATTTTGGAAAAGGTGCAAGT
CTTGGTCTTAAATCTCTCATCAAAAGTCCTTCTTTGAAGCTTAGTGAATTGACAATTTCA
AAAGTATCAAAAATTATTCAAACGTCTCTCGGACATGATGGACTTCATACACTTTTACTA
AGTGATGATGGTAGTGTTTTCTTTGCTGGCACAGTTCGTAGAGGTGAAGATGGTGAAATT
TCTAAAAGACGATTACTAAAACCAACAAAACCTAAAAGAATTTCACGATTGGACAATCAT
TTTATTGTCCATGTTTCATCCAATAATGGAACGTCCGCATTTGTTACAAAGACTGGGAAA
TTAATCATGTTTGGTAAAGATACGAGCTTTTGCGATTCACATGGTGTTGTACAACAATTG
CAGGATCAACATATTATTAAAGTTGCATTAGGAAAAGCACACACAATTGCATTGAATTCG
AAAGGTCAAATTTTCTCATTTGGTGTTAACAACAAGGGTCAATGTGGTCGAACATTCACA
AGCAAAGATCGTGTAGCAAATGAAGAATTTTTCTCATTGAAATCAGAAAAAATTAATCCT
CAGTCACACTTTTTATGTGACATTGATGAGCATGAAATTGTTGAAGAACAATGTAAGATT
TGTAAAATTTGCTATGAATGTACGGGTTATAACAAAATGTGTGCAGCTGCAACTAAAATT
GCTATGAAAAGTCGAATTCCTGGATCCAACTGCTTTTGTGGTCATGGAAATTCAGGATGT
GTAAAATGTGGAGCTTGTTCAACATGCATATCAAAACAAGAGAATGACATTAATAATGAA
CATGTAGGTTCACCTGAAAAACAAAAAAAGTTGAAGAAAGAAGTGAAAATTAATATTGAT
GAATATAATTTCCCTAATGAATCAGAACGTGTTGCACCACTACCACCTTCTCGAGTTCAG
ATTCCCTCAAATAGTCCGATTATTCAAATTGCATGCGGGTTGCACCATACAGTTGTACTG
ACATCTACGGGTGAAGTATTTACTTTTGGAAGTAATCAATATGGCCAATTAGGAACGGGT
GATTTACAACCTACAACTACGCCAGTGCAAGTTAAAATTCCATGCATGGCTAGTCAAGTT
GCTGCAGGCAGTAATCATACAGTGATTTTATCATCAAAAGGAATAGTTTACACTTTTGGT
AATTATCAAAAAGGTCAATTGGGACGATTGCCAACTGATGTGAATATTACTGCTGCAAAT
CAACAATCACAACCACAATCGATGAGTGGAAGTTTTAAAAATGATCCATTCATGAATCTA
AATGATTATCAATCTTCAGATAATGCAAGTAACATTATGGCACAACGACAACGATTCTTA
TGGAACTGCATTCCAGCATCGATAACAAGTATTGGACCAAATTTTCGTAAAAAAGCATGC
TGGATTTCAGCGAGTGGTGATCAAACTTTCATAAAAATCGATGAATCGCTCGTGAATGCA
AATTCACTTACAAAAATTAGCGTTGCAGCCGATAAAAATACAATAATTTTTATATCAAAT
AATGAGGGCGTTCCAGGCTGCATCACAATCAATAAGCAAGACGGAAAATGTAAAACTCAT
GTTAACAATCAATATGTATTTAATAACTATTATTATGAGGAAAATTACGATGATATGAGT
GGAGAATGTTCATCAATGAGTGACAAATCTTTGCGTGATTCTGGCGATTTTCATCAATTC
TCGTCTTCAACATCTTCATCGCCGTCATCTTCTACAGTCACTGCTATAAGTAATACAATA
TTCACGATTGATCCACTTTACGATGTACTATGGTGCTTTGATGTTATGAATAAGAAAATT
CTTTGTTTTAATATACTTTTGAGTAAAGTAATTGGTAATGCTAGTGCAATATTCAAATCA
GACATGACATTGCCAAATAAAAATGTCATGAACATAACAAGAGTTCACGCCTGTCTCAAT
GTACTTGCGTGTTTAGATACGCTCGCTTGTGCTCAAAATTCGCTTGACACATGTTTCGAT
TTTGATTCAAAGTCACGCGTGATCGCACCGAAAGTATCTACTATTGAACCTTTAAAGGAA
GTTAAAGAGACAAAGAAGATTTGTAGATTTGAAATGATGGGCAGTGGTTGGGGATATTTT
GGCCATAGCGTTGAAGCAATGAGATTTATGTGTGACACAGATATTTTAATGGATGGAATT
GGAATGTATGGCGGACGAGGTGAATATAGTTGCAAAATTAAAATTTTTGATCTTGGTGTT
GATGGCGGTGGTTTTGAAAAAGATGGAACAGTAATTTTTGAATTAGATGATGTGCCCTAT
TATTGTCCTGCTAGAACAATTCATAATATTACATTTCCAAAGCCAGTAAATGTTGTGGCA
GGAAAATGGTATTTAATTTGGGTAAAAGTTTCTGGTCCATCATCAGATTGCGGTTCAAAT
GGTCAAAATATTGTTGTTGGTGATGATCAAGTTGTTTTTACTTTTAAATCATCAAAAAAA
TCCAATAATGGAACTGACATTAATTCTGGACAAATTCCTTCAATTCTTTATCGAGTTGTG
ACCCATGATAGGAAAATATCTGATGCATCAACAAAGAATGAAGTTGTTTGTAAAATTAGT
AAACAATTTATAAACACAATATCACCTGAAAGCTTTGAAAGTCTCGTAAAATTATTAAGT
TGGTCATGGAGTCAATTTAAAGGGAAAATTAACGAAATAGAGAAAATTTCATCGATCGAT
GAACCTTTGCTTAATCGCTATGTTTACACATGTCAAGTATGTCTGCGGTTACTCAAAAAA
TACATCAATGAAATTTATCCATCAGAATCATTTAAATTTAATGAGAATGAAAAATCAATA
GTGTCTCGTTCTTGTCAACCACCGGCAGAAGTTATAAAATCAAATCCGCTGCCACAGTCA
TCAACTTCAATCATGTCGGAAATGAGTTTACAACATGTGATGAGAAAAAGCAATGTAGAG
AAAATTCAATTAGCTGAAAGTATTGGCAATGTTCGTGCACTTTTAATTCAAATATTGTGT
GATGATTTGTCAAATGTTTATGGAAGTAAAACTTCAACATTAGTTTACAATATAATGGAT
GAATGCAATAATACTTTTGTCAGTTGTTTTAATGCCTTTTATCCAACTTCATATTTAAAA
TGGGATTGTCTTTGTGATCTATTATCACAAATGGACAAAGGAGTTCTTCATTCTCGTCTC
TTGAGTGGTGTTCTTGCTGGCCTCTGTGATCCAACAGTCAATTTAAAATCAACATTTTCA
ATAATGTCACCATATACTGAGCAAAAGATTATAACAAGTCCAAGTGATAATTCAGGCTTT
CCAATTTTACAAACATCTGACAATTATCATTATCCTATTCTTGTTGAACAAATGATGTAT
CGAATGCAAAAGGAAAAATCAAATCCAGTATATGCAACATGGAATTTTAAGGAAATTTTG
ACACGTCTGTTAGACATAATTTCACGGCCGATAAAAATAAAAATTGAAGGAATCTATAGC
AACATAAAACTTGACTCACTTTCAAATGAATATATTAGAAAGACAAGCAATTATAATTTG
ATATCCAATTGTTGCTTTTTGCTGTCAAAAATACTCGCTGAAATTGTCTATCAAAGTTGT
ACGGCTGATACAGACACAACAATAATTTCTCCATATGCATTACAATCAACAGGTGTCAGA
TTTAAAAAATGTGACTACAGTAAAACATGGAATACTGGTCATTTTGCATCTGATGCAATT
TGTTTTACTGTTGATCGATCTGGAATTGTTTTGGCAGGATGTTGTGTTTATTATGGTTCT
GGAAATTATGAATATCAATTAGAATTATTGCATGATACCCTTGATTCAAAAAGTCAAATG
CAACATAAATGGGAAACACTTGAAACTGCTTATGGAACATTTGATCAAGAGAATGTTCAT
CGTAATATGGTGCAATTGAAATTTGAACGACCAGTGCCATTACGTGAAAATGTCTGCTAT
GCAATTAGGTTCTGTTCTCAAGGTGCTCGTACTTGCTCAGGTGATGCAGGCTACTCTCAC
GTGCGTGGACCTTGTGGAACAATTTTTCGATTTTATCCATGTGATTTGAGCTTTAATGGA
ACGACTCCAATACGTGGACAAATTCCGTGCCTGCTTTATTATAGTGTGCCACTCAGCTAT
CAAACTAGTAAATTAAAAAATAACAAAGAAATTTTCGCACGTGACATTGCTTTAGAATTT
TCATCTGACATCGTCCATAGAAGTCGCGAACTTTTAATTCTCGCTAGAAATGCCTTTCTT
TATGCTCTATCTTCATCAAGTGACAAAAGTTCTTCAAATTCATCAAACACTGCACAAGCT
TTTGATTCTGAGCACAATATAACACCTATTGAAGAACATTTTGATGTTTCGTGGATGAAT
CCAGTTCCTCCAGCAATCACAACAACACCTGCTTCTATTAAAACACCTTCATTTGTACCT
TACTATACCTCAAATACTTCATCAACTGCCACAACAACTAAAGAAACGAATATTAATAGT
GCCACAAAAGACATTACGAAACGAATTGAAACATTCTCACGTGGACTAATTGAAACATTA
AAATTAGATAAGAAATTCGATCGTGGATCATTAGATTGTGTAGAAGTTGATTCTGCTGCT
GAAATTACACCAAATGATTTTCTCGATGAAGGCACGAGTTCAAAGAAAAATCGAAACGAT
TTGAATGATTCACAATCGCAATTTAATGGCAACACAAAGAAATCTACAAATCAGTTGACA
AAAAGTGATAGTGAAGATAGTATTGGTGAACGTGAACGTTTAAGTGAAATGTTTACAACA
GAAGAATCAAGTTTATTCCATACATTGCTTCCATTGACTGTTGCTCACATTAGTCGACTA
ATATGCAGTGATCCAAAAGTTTCTGTTGAAATTTTAAATTTAGTCAAGATGATTTTGCCA
CATGTTTCATCATGGAATCAAATTTCCAATAAAAATATTTCTTCACCCTCACATAATGTT
ATAGAGAAATCTGCTCTAAATTATGAATTGTGCACAACAAGCAATTATTATGCAGTTCTT
GAGAGTGATCATCCATATAAAGGAACTTCAATTTATTCATATAAAGTTGAATTTCCATCG
TCTGTAAAATGGATGTCATTAGAATTTGATCCACAATGTGGCACAGCACAACCAGAAGAT
TGTTTAAAAATTTTAATTCCAACAAATCTTGATATTGTCATGAATAATAAGAATAATGAT
GAAAAGGGAAAAGTAAAAGTTCAAAAGAATTTTACTGCCAATGATAAAGAAAATGCAGTG
TTATGTGAGCAGCAAATATTGATTAAAAAATTCAATACAGAAAGTGGATGGTCTACAAAT
GCAATAATTGTGCCTGGAAATGAAATAATGTTGTCACTTGAAACAGCATCAAATTATTTG
GCTGATCACAAATTAAATCGCTATGGCTTTAAATGTATTTTGATTGGATATGAAAATATC
GATGTCACAAAAACATTCAATAACTCGCTAATTAATTTAGAATCAGAGTTCACGTATTTG
GGTGGAATGTGTAGTGCAAATTTGATGAGAAAAGACTTGATTTTCTCAGATGAGAAGACG
GATGATTTTTGGGCAACAGAAAATACATTGAAAAAACATTCTGTATTATTATCAAAAGGC
TTATCGATACAAAATGAAACATTAACCATGAATAACATCTTAGAATATGATATTTCTATA
GAGTAA

>g12888.t1 Gene=g12888 Length=2401
MLNEDLFVDFYSMFIHSYDNSKKNKEKGKDKGKISSESHEESGIASPIAFEISSNASKFA
AYSAIRSLVLEHETKYNTLSKLENKLKSIEHQTSRSKSEDDGSECKIIDALIRNEAKISV
PYIVSAGIQTLFDIISETKHQHPVICSKALSSLFDIFQGHDPESFKSEPDALFQSLYDLL
LDLATFNGASPQKSADYNDEKKNWSAISCSVLLALCVARGDTGKIIKAIASILMSSNPVN
QSIKLPEILIKLQKSVECAALGRPERPSFFEYGIPQESLIDEFHIKNITVDVSTSSSIAS
DGKFLYILHGKSLYKVGSGYNSTTKGLIYKMNKDFTKDKRGWIGYCHDKLYYKKMSKRNV
ENFVVIDRDSLTFQSPLQLSSKTLKKDAVNYTLYSDGETINAISAVKDDNFVIKEIISSN
DFSFDLTLNLAKRSFRTYGYTPFEEEILNNAQLQKIQSSYNCFVPALPDDSEISGIVSGK
EFGLVMTSNNKVYYFGKGASLGLKSLIKSPSLKLSELTISKVSKIIQTSLGHDGLHTLLL
SDDGSVFFAGTVRRGEDGEISKRRLLKPTKPKRISRLDNHFIVHVSSNNGTSAFVTKTGK
LIMFGKDTSFCDSHGVVQQLQDQHIIKVALGKAHTIALNSKGQIFSFGVNNKGQCGRTFT
SKDRVANEEFFSLKSEKINPQSHFLCDIDEHEIVEEQCKICKICYECTGYNKMCAAATKI
AMKSRIPGSNCFCGHGNSGCVKCGACSTCISKQENDINNEHVGSPEKQKKLKKEVKINID
EYNFPNESERVAPLPPSRVQIPSNSPIIQIACGLHHTVVLTSTGEVFTFGSNQYGQLGTG
DLQPTTTPVQVKIPCMASQVAAGSNHTVILSSKGIVYTFGNYQKGQLGRLPTDVNITAAN
QQSQPQSMSGSFKNDPFMNLNDYQSSDNASNIMAQRQRFLWNCIPASITSIGPNFRKKAC
WISASGDQTFIKIDESLVNANSLTKISVAADKNTIIFISNNEGVPGCITINKQDGKCKTH
VNNQYVFNNYYYEENYDDMSGECSSMSDKSLRDSGDFHQFSSSTSSSPSSSTVTAISNTI
FTIDPLYDVLWCFDVMNKKILCFNILLSKVIGNASAIFKSDMTLPNKNVMNITRVHACLN
VLACLDTLACAQNSLDTCFDFDSKSRVIAPKVSTIEPLKEVKETKKICRFEMMGSGWGYF
GHSVEAMRFMCDTDILMDGIGMYGGRGEYSCKIKIFDLGVDGGGFEKDGTVIFELDDVPY
YCPARTIHNITFPKPVNVVAGKWYLIWVKVSGPSSDCGSNGQNIVVGDDQVVFTFKSSKK
SNNGTDINSGQIPSILYRVVTHDRKISDASTKNEVVCKISKQFINTISPESFESLVKLLS
WSWSQFKGKINEIEKISSIDEPLLNRYVYTCQVCLRLLKKYINEIYPSESFKFNENEKSI
VSRSCQPPAEVIKSNPLPQSSTSIMSEMSLQHVMRKSNVEKIQLAESIGNVRALLIQILC
DDLSNVYGSKTSTLVYNIMDECNNTFVSCFNAFYPTSYLKWDCLCDLLSQMDKGVLHSRL
LSGVLAGLCDPTVNLKSTFSIMSPYTEQKIITSPSDNSGFPILQTSDNYHYPILVEQMMY
RMQKEKSNPVYATWNFKEILTRLLDIISRPIKIKIEGIYSNIKLDSLSNEYIRKTSNYNL
ISNCCFLLSKILAEIVYQSCTADTDTTIISPYALQSTGVRFKKCDYSKTWNTGHFASDAI
CFTVDRSGIVLAGCCVYYGSGNYEYQLELLHDTLDSKSQMQHKWETLETAYGTFDQENVH
RNMVQLKFERPVPLRENVCYAIRFCSQGARTCSGDAGYSHVRGPCGTIFRFYPCDLSFNG
TTPIRGQIPCLLYYSVPLSYQTSKLKNNKEIFARDIALEFSSDIVHRSRELLILARNAFL
YALSSSSDKSSSNSSNTAQAFDSEHNITPIEEHFDVSWMNPVPPAITTTPASIKTPSFVP
YYTSNTSSTATTTKETNINSATKDITKRIETFSRGLIETLKLDKKFDRGSLDCVEVDSAA
EITPNDFLDEGTSSKKNRNDLNDSQSQFNGNTKKSTNQLTKSDSEDSIGERERLSEMFTT
EESSLFHTLLPLTVAHISRLICSDPKVSVEILNLVKMILPHVSSWNQISNKNISSPSHNV
IEKSALNYELCTTSNYYAVLESDHPYKGTSIYSYKVEFPSSVKWMSLEFDPQCGTAQPED
CLKILIPTNLDIVMNNKNNDEKGKVKVQKNFTANDKENAVLCEQQILIKKFNTESGWSTN
AIIVPGNEIMLSLETASNYLADHKLNRYGFKCILIGYENIDVTKTFNNSLINLESEFTYL
GGMCSANLMRKDLIFSDEKTDDFWATENTLKKHSVLLSKGLSIQNETLTMNNILEYDISI
E

Protein features from InterProScan

Transcript Database ID Name Start End E.value
21 g12888.t1 Coils Coil Coil 72 99 -
18 g12888.t1 Gene3D G3DSA:2.130.10.30 - 449 682 1.9E-28
17 g12888.t1 Gene3D G3DSA:2.130.10.30 - 783 917 4.2E-30
20 g12888.t1 Gene3D G3DSA:2.60.120.820 - 1181 1343 3.7E-53
19 g12888.t1 Gene3D G3DSA:2.60.120.820 - 1717 1884 3.5E-57
24 g12888.t1 MobiDBLite mobidb-lite consensus disorder prediction 2045 2090 -
23 g12888.t1 MobiDBLite mobidb-lite consensus disorder prediction 2058 2083 -
7 g12888.t1 PANTHER PTHR22870:SF398 E3 UBIQUITIN-PROTEIN LIGASE HERC2 491 606 4.8E-52
11 g12888.t1 PANTHER PTHR22870 REGULATOR OF CHROMOSOME CONDENSATION 491 606 4.8E-52
5 g12888.t1 PANTHER PTHR22870:SF398 E3 UBIQUITIN-PROTEIN LIGASE HERC2 616 658 4.8E-52
9 g12888.t1 PANTHER PTHR22870 REGULATOR OF CHROMOSOME CONDENSATION 616 658 4.8E-52
4 g12888.t1 PANTHER PTHR22870:SF398 E3 UBIQUITIN-PROTEIN LIGASE HERC2 807 888 4.8E-52
8 g12888.t1 PANTHER PTHR22870 REGULATOR OF CHROMOSOME CONDENSATION 807 888 4.8E-52
6 g12888.t1 PANTHER PTHR22870:SF398 E3 UBIQUITIN-PROTEIN LIGASE HERC2 1181 1343 4.8E-52
10 g12888.t1 PANTHER PTHR22870 REGULATOR OF CHROMOSOME CONDENSATION 1181 1343 4.8E-52
12 g12888.t1 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 527 540 8.3E-7
14 g12888.t1 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 628 644 8.3E-7
13 g12888.t1 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 644 658 8.3E-7
15 g12888.t1 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 819 840 8.3E-7
3 g12888.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 824 870 7.8E-12
2 g12888.t1 Pfam PF08005 PHR domain 1188 1337 2.9E-39
1 g12888.t1 Pfam PF08005 PHR domain 1720 1874 4.3E-34
22 g12888.t1 ProSitePatterns PS00626 Regulator of chromosome condensation (RCC1) signature 2. 810 820 -
25 g12888.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 824 873 15.147
16 g12888.t1 SUPERFAMILY SSF50985 RCC1/BLIP-II 464 893 2.62E-58

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values