Gene loci information

Transcript annotation

  • This transcript has been annotated as E3 ubiquitin-protein ligase highwire.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12891 g12891.t1 isoform g12891.t1 26743417 26753121
chr_1 g12891 g12891.t1 exon g12891.t1.exon1 26743417 26743538
chr_1 g12891 g12891.t1 cds g12891.t1.CDS1 26743417 26743538
chr_1 g12891 g12891.t1 exon g12891.t1.exon2 26745685 26748917
chr_1 g12891 g12891.t1 cds g12891.t1.CDS2 26745685 26748917
chr_1 g12891 g12891.t1 exon g12891.t1.exon3 26748981 26749100
chr_1 g12891 g12891.t1 cds g12891.t1.CDS3 26748981 26749100
chr_1 g12891 g12891.t1 exon g12891.t1.exon4 26749189 26750090
chr_1 g12891 g12891.t1 cds g12891.t1.CDS4 26749189 26750090
chr_1 g12891 g12891.t1 exon g12891.t1.exon5 26750162 26750656
chr_1 g12891 g12891.t1 cds g12891.t1.CDS5 26750162 26750656
chr_1 g12891 g12891.t1 exon g12891.t1.exon6 26750742 26752622
chr_1 g12891 g12891.t1 cds g12891.t1.CDS6 26750742 26752622
chr_1 g12891 g12891.t1 exon g12891.t1.exon7 26752681 26752782
chr_1 g12891 g12891.t1 cds g12891.t1.CDS7 26752681 26752782
chr_1 g12891 g12891.t1 exon g12891.t1.exon8 26752840 26753121
chr_1 g12891 g12891.t1 cds g12891.t1.CDS8 26752840 26753121
chr_1 g12891 g12891.t1 TSS g12891.t1 NA NA
chr_1 g12891 g12891.t1 TTS g12891.t1 NA NA

Sequences

>g12891.t1 Gene=g12891 Length=7137
ATGTCAATACATGAGAAACTCACGAAAATTATCTTTTACGGAGTGCACAGCACACAATTG
ATTGAAGTAATTAGCGAGTCTGTCGAAAATACAAACAAACAAATGATTTTTTCCTACTTC
GGTAGCGAACAATCACATGAGAAGCAATTTCTCAAAGATTTTGTTTTTGTGGCGCCAGAT
TCAGCGGGTGGACGTTTAGCCTCTTGGATTCAGCCTGAATCACGCTTAGATCCAAATCGT
TGTGAACTAAAATTATTTCAAGATCCAATACAAAGCGGGTGGCCAACAAAATTTCAAATT
GAAACTCGAGATCAATATGGTGAAATTGTTTATGTTCCAAATATCAAAATTCAACTAAAA
GTCGCATTAAGCTCAAATTTCTCGAATGAAAAACGTTATAGCAAAGTGTGCAAAGAACAA
AGTGCATTTATGCCATTAGGAAAGGTCAGTTATGAGCCAGTGATTAAGGAAAAAGAGAAA
ATTTGTCTAAAATCAATTACTGCTATGAAAGCTTACTCACAATATTCATTTGAAGAACTA
CGAATGTATACACCAGTGCAAAATAAAACGTCAGATTTAATGACAGCAAAAGATTCCGGT
GATCAAACGTATTCAGTTGTATGGACGCCAGAAACAGCTGGAAATTATGTCATAAATATA
ATTATAGATGGTGTTCATGTAAATGAAAATTACAATGTGACTGTTGTCAATGCAAATGTG
CCGCCTCCAGTCAAAGAGCATGCATTGAAAAAGATACAGCCACAGTATAAGTACCGCAAA
TATTATGCCGAATACACGTCCGGTTTAAGAATTCGTTTGCACCCAACACTGCAAGCTGAT
GTTATTGGTGTTATAAAAGTAAATGATGTCATTTCATTTATTGATGAACTTGAGAATGGT
GATGGTATCTGGGTAAAATTATCAACAGATTCAATTAGAAAATATTGTTCATCCTCTTGG
TATCCATCTGAAGCATGGTGTCTTTCATACAATAAGCATTTTGACAAGCGACTCCTTTTC
TCTCTTATTGAATCCAATAGTGAATCAACAAATCCAACTGATGACATGAATAATGTGAAA
TTTTTCGATGACAGCGAATATTATAGTCTTGAAGAGTCAAGTGATTTGCAAGTAACGACT
AATTTTGAAGATGCAAAACTTGAAGAAGATGATGAAAAACCGCCAACATTTGAAGATGCA
ATTGTCGAGTCAGTGGAAAAGACAAATCAATCAAATTTGACAGATGTTATTGCCGGCGTC
GTAGAAGGTGGCGCAAATAAACTTCAACAATTCCAAAAATGGTTCAAGCGCGATTCAATT
AGCGACACAACAGCGACAATACGGAAACGAATTGGCTCAATTCCAGAAGTTTACAACAAT
AATACGCTCGATTTGAAGAATTTAAATACAAATAATGTTGCTGACAAATTGTCAAACGAT
ATTAATCTTACATCGCCCGTACAAGATCAAAATATTATTCCAACTAATAAGATGACAAGT
AAGATGACTGAAAGTCAAACTCTCGCATATAAAAATACAAATCCATTCACGACAAGTCTC
AATGTGAGTAAAAATTTGAGAAATTTAGAATATGAAGAGATCAACACACCAAAACAAGCA
CTTTCTCCTTCTGTGGCTGAAACGATACGTGCTATATTCGCCGCATTCCTTTGGCATGAG
GGTCTCGTGCATGATGCAATTGCTTGTGCCTCATTTCTTAAATTTCATCCGACAATTCCA
AAAAGCAATGTCTATGGCATGGATCAGACACTTATTGAACAACAACAAAGACATTATGAG
CCGCTAACGAAAGAAGAGAAAATTCAACAGCGACATTCAGTTGAAATCACAAATACTAGC
AACTATCTCAATGCGCGACCTTCAACTCTAGAGGCACTGACAAAAAGTGGCTACTGCTGT
GTGCATTATCGCAAGCAACGTGGGAAACACAACGAAATGAATGCTAGTGACGATTTTGGC
ATGCATGGAGTTTGTCCGCCTGCTCTAAAATGTTTGATTTTTGTTTGGGACGAACTGAAT
AAAGACTTTCAAGGTTTTGTGAATAAATTCCTTAGTGAAAAAGAGAGCAAAGAGATGGCA
ACTGCTACTGCTGCTTCAAAACCGGCCGTCATTGCACCATTTAATCCCAGTGATGTTAAT
GAAATTGAATTTCAAAAGAATAAATTGAAAAATAAAAAGTTATTGGATGAAGGTAATTCA
GCAATGGGTGCAGCAAGTAGTGGCGATACAGTATGGTGTGAACTCTGTGAAGCCGACATA
AATTCTGGCAATTCACAAAATCATCCTTACCAGCAGAATGCTTTTACACAGCATCTAAAA
TCAAATCATCCGGGCTGTGGTGAATCAGCACGCGGAAAAGGCTATAATGCTAATGGTGTT
TATTGCGAAGGATGGGCTGGCCAATGTGGTGAAGAAGGTGTAGGTGCTACAAGTTGGTAT
TTGATTTGCGAAACTTGTCGTGACAAGTACATGCTAGCTAACAATAAAAAGAGTCTAAAT
GTAAATGATTCTCTTTTGGCACGTGCTGCAATGCAAGAGCCAAAATTTGTTCAGCCTTCA
ATAACAACAACTGCTGCAATTAATACAACAACAACAGTTGCTTCAAATACCGCAATTGTA
AATCCATCATCGACAGCTTTCGGAACAAAGAAAACAAAAGTGAATTCAAATATGAGCATG
GAATTCTTTGATACGATGAAAAACAATGCACTGTTTCTGTTAGACCTCAATTCACACAAT
GGAGGTCTGCTTAACAAGTCTTCAGGGAACAATCTTATGCCATTGAAGAGTAAGTCAACC
ATGAGACATAGCAGTGCAAGTGAATTTATGACACAGCCAAATACAAGTAACTTTTCTCAT
CGCTTGTCAACAAATGTTGTTGATGAGAATATAAGAAGATCATCTTTACAAAAACAAGGT
TCAATTACTAATTATTTTGGTAAAAAGATTACACCTAATGGAATAAATGATGCAGCGCCT
GATCTTTTATGGACACCTCCTGAAAGTATCACTTGCCTTGAAATGTTGAATGCAAAATTA
AGTGAATCAGATTCATGCAATGGTTTTAGCCTAGACAATGAGAATAAGAATTTTTATGAT
CCACTCATTATTAATGGTCAACAACAGCAAAACAATCAGAATGATGTAAGAGGAAACAAT
GAGAGCAAATTTCATCGAAGTTTTTCAATGATTCAAGGTTGGGGTCTTTATACAAATAGT
CAAATGGATAAAGAAACTACAAATCATGAATGCATTGCTGGCGGCAATCAAGTGCACCAA
AACAATGAGAATCGTGTAATTATGCGTAGGAAGAAGACATGTTTGTGTGATTCAACGAGT
GAAGCGAGTTTATTGAATTTTCCATCAAAAAATTTGAAGAAATTAGTTCCTGATAACATT
CTTAATCCATCATTTAAAGGATTTAGTGAAGTTTCATCATCACATGATATTGAAAAAATG
GAAAGTGCATTAGAGCTTAAGAAATTCACAGAAAATGCATTTTATGACATTCTACAACAT
CATACAGTTGATGAACCAACAAAAGAATTTTCTTTCCTTAATCGTCCGACAATCAGTTTC
ATATTTGAGAAACATGATCTCGATAAATTGCGTTATTTATTGAGAAAAAATTTAAGGAAA
GCAATATGCAGTGTTTACGGATTACAAGCACTTAATTGGTTATTGAGAACTGTAACACAA
ACAATGTGTGTGCATGACATCATGTGGTGGTTTATTTCATCGTTAGTGCAAACAAAGAAC
GATAATGAGAATGTTTTGAAATTGGAAGACTCTGATGTTAGTTATGAGCATCCTGTGGCA
ATATCAAATGTTGATGACCGAATACAAAACATGTTATCGCAAAATCTTCATATGTTGCTT
CAAAGTATAGCAGATATAACACTCGCATTGCCATCGGGTTCCGCTATTCAAAGACTTGCA
ATTCAATGTTTTGGAATTAAATTTCGACAGAGTGATCATCAATTTCTTCACTCATCGCAC
GTTTTTGGAAATATCTCAAAGATTTTATCTAAAAGCGAAGAGTTTAATGAAGAAAATCTT
CTCTATTCAACGGCAATGGGCGAAATGCATGAAAATCAATTGGATGAGAGCAACGTGAAG
ACAGCAAAAGATAAAGTCACAGTTTACAATCATATCGACATCACTGAAGTCTTTGAGTTC
ATTATTTCCTCACGGCAAGCGATGGTCGGTGCCTTAACTGACAATTCAACCGAAACATTT
TGGGAGAGCGATGACGAAGATCGCAATAAGCCCAAAATAATAGAGATTTCAATGATAAAA
CCGCATTATGTGTGTAAATCAATCAACATTCACATAGATAATTGCAGGGATTTAGCTCAT
AAAATAACGAGCTTCAGTATATACACGGGTGCATCACTTGGCGAGCTTAATTTATTAGAA
ACAGTAGAAACTGAATCAAATATTGGCACTTGGTATTCTGTGTTGATTAAAGATGAATCC
AATACACATTTTCGTATTGAATTGCGCGGTGTAGAAAACAATATTCGAATACGTCAAATA
AAATTACTTGGCTATTCAAATGATACGAAAGTCAGTCAAGAGGCGGCATGTGCAATTAAA
AAACAGACAAATGCACATCACATCACTCAAAAATACTGCGAACTTGAAACATTGCGAGTT
TTTCGTGTGCTTACAAATCAAGTTTTTGGAAAGTTGATCATTAATCAAGAGCGACCATCA
AGTCATCAACATTTCACAACATCTTTGATTGAATCACATATGGACTCACCGGGCGTCGAT
TCTCTTGATTTACGAGAGCATATGGTTGGCATCTTATTTAGTCGTAGCAAACTTACGCAT
CTTCAGAAGCAGATAATTGTTCACATTGTGCATTCAATTCAAAAAGAAACGCAAAAGTCT
CGAGAGGAATGGGAAAATCATGTCAACACAATTAGCTCGAGTACAATTTTCAAGAGCACA
ATGAGCACGAGCGAAGCAATTATGCCAAAATCAAATGATGTCTATTGTTTTGAAATGCTA
AGTATGGTCTCAGCACTTTCGGGAAGTTCCGTTGGTCGTTCGTATCTTTCACATCAAGTC
GATTTAATTAAAGACTTGCTAATATTATTGCATACTGGAAGTGAACGTGTACAGCGTCAA
GTTACACTTCTATTAAGAAGAATTTTGCCAGAAATCTCACCAGAAACACTCTGCAATATT
ATGGAAATTCAATACAACCCACATCGTGATATCAACAGTCTGTTACAAAATCCAAAACAA
CTCAATCCAAATTGCATGGGAATTATCGATATTTTACTTGCAATTATCGCAAAGTCTTTA
CAAATACAAGTGAAATTTAAGAATGGAGCAAATCCATTAAATAACAAAAATGTTACAGTC
AAATTATGCGATTATATTATGCCAACAACACATTCAATTGCATCTCAAAGATTAATTCCC
GCATATCAACATCAAATTAGCGGCGGAACTGATGTCGGTTCAAATATGTCAAATTCTTCA
CGTGAATATGATTCAATTGATAAAAGTGCAATAAGTGTTAGAGATGAGGGAAAAAAGAGA
TGGTTTTTATGTGGAACAGCATCAACTAAATTAGCTGAAAATATAATTTGTCTTATTAAA
GATATGATCAACGGAAAATTATCAGAAAAATGGTCGAATGTTACTAAAACAGCAGTAGCC
GAATGTATTATAAATCTCGCTCATCTAGATGAAGTTCATCGACAACCTGAAATGTGCTTA
AAAACACCAACAATTTGGCTTGCTCTAGCGAGTCTATGTGTTCTCAATGAAGATCATGTG
ATGAAATTGTCATCAGGTCAGTGGAGCAAAACGGGAGATAACAAACGACCTCTATGCATT
AACCACGACGATAGCATCACGAATGCAGTGATCGAGTGCATAGAATGCGGCACTTTATGT
TGTGACTGTGACAGATTCTTGCACTTGAACCGCAAAACGTGGAATCATCATCGTACGGTT
TGCAAAGAGGAAGAAGAATCAATTAAGGTCGAACTTCATGAGAGTTGTGGTCGAATCAAG
CTTTTTTGGCTTTTGGGATTGGCTGATAGCAAAACCCTTAAGGGTATAATTGAATTTCGT
GATGGACACAACATTATAATTTGCGATCCACAAAATGCTATTGGTCGATGTAGATTTTGT
GGTGTCTATGGTAATTCGGGATTATTGTCTGTTGGAAATGTTTGTGTAGAACAGCAATGT
CAAGAATATTCAGCAAATGCTTGTTCAAAGATTCTTGCTTGCGGACATTTCTGTGGTGGT
ATAATTAATGAAAGCAGTTGCCTTCCATGTCTTCATCAGAAATGCCAATCGGCAGCTAAT
TTCGATCCTAAAAAGCCTCGTCTTACGCAAGATGGTGATGATATGTGTATGATTTGTTTC
ACTGAAGCTCTTTCGTGTGCACCCTCAATACAAATGCTCTGCGGTCATATATATCATTAT
CATTGTAGTCAAACAATTCTTCAAAAGCGTTGGAATGGAGCAAGAATTAGTTTTGCCTTC
TCTCAATGTCCGATTTGTAAGAATGACATATATCATGAATCATTGAAAGATTTATTGGAG
CCAATTAATGCGTTGAAAGAAGATGTCAAGCGTAAGGCTGTCATGAGATTAAAGTATGAA
GGAATCGATAAGGAAATGATTGACGATCATAAAGACCTCGCTACTTACGCTATGGAGAGA
TATGCCTATTATGTGTGCTGTAAATGCCAGAAGGCATATTATGGAGGTGAAGCAAGATGC
GATGTGGAATTAGGTGAAAATTTCAATCCTGAAGAACTTGTTTGTGGTGGTTGTTCTGAT
ATTGCTAAAGCTCAGATGTGTCCTAAACATGGAATGGATTTTCTTGAATATAAGTGTCGA
TATTGCTGCTCAGTAGCAGTTTTCTTCTGTTTTGGTACTACACACTTTTGTGACACGTGC
CATGATGATTTTCAGAGGCTCACCAACATTCCAAAAATAAAACTGCCAAAATGTCCAGCT
GGTCCCAAAGCGACTCAATTAATGGGCGATGAGTGTCCTCTTCATATTGTTCATCCACCA
ACAGGCGAAGAATTTGCATTAGGTTGTGGAATTTGCAGAAACTTTCACACATTTTAA

>g12891.t1 Gene=g12891 Length=2378
MSIHEKLTKIIFYGVHSTQLIEVISESVENTNKQMIFSYFGSEQSHEKQFLKDFVFVAPD
SAGGRLASWIQPESRLDPNRCELKLFQDPIQSGWPTKFQIETRDQYGEIVYVPNIKIQLK
VALSSNFSNEKRYSKVCKEQSAFMPLGKVSYEPVIKEKEKICLKSITAMKAYSQYSFEEL
RMYTPVQNKTSDLMTAKDSGDQTYSVVWTPETAGNYVINIIIDGVHVNENYNVTVVNANV
PPPVKEHALKKIQPQYKYRKYYAEYTSGLRIRLHPTLQADVIGVIKVNDVISFIDELENG
DGIWVKLSTDSIRKYCSSSWYPSEAWCLSYNKHFDKRLLFSLIESNSESTNPTDDMNNVK
FFDDSEYYSLEESSDLQVTTNFEDAKLEEDDEKPPTFEDAIVESVEKTNQSNLTDVIAGV
VEGGANKLQQFQKWFKRDSISDTTATIRKRIGSIPEVYNNNTLDLKNLNTNNVADKLSND
INLTSPVQDQNIIPTNKMTSKMTESQTLAYKNTNPFTTSLNVSKNLRNLEYEEINTPKQA
LSPSVAETIRAIFAAFLWHEGLVHDAIACASFLKFHPTIPKSNVYGMDQTLIEQQQRHYE
PLTKEEKIQQRHSVEITNTSNYLNARPSTLEALTKSGYCCVHYRKQRGKHNEMNASDDFG
MHGVCPPALKCLIFVWDELNKDFQGFVNKFLSEKESKEMATATAASKPAVIAPFNPSDVN
EIEFQKNKLKNKKLLDEGNSAMGAASSGDTVWCELCEADINSGNSQNHPYQQNAFTQHLK
SNHPGCGESARGKGYNANGVYCEGWAGQCGEEGVGATSWYLICETCRDKYMLANNKKSLN
VNDSLLARAAMQEPKFVQPSITTTAAINTTTTVASNTAIVNPSSTAFGTKKTKVNSNMSM
EFFDTMKNNALFLLDLNSHNGGLLNKSSGNNLMPLKSKSTMRHSSASEFMTQPNTSNFSH
RLSTNVVDENIRRSSLQKQGSITNYFGKKITPNGINDAAPDLLWTPPESITCLEMLNAKL
SESDSCNGFSLDNENKNFYDPLIINGQQQQNNQNDVRGNNESKFHRSFSMIQGWGLYTNS
QMDKETTNHECIAGGNQVHQNNENRVIMRRKKTCLCDSTSEASLLNFPSKNLKKLVPDNI
LNPSFKGFSEVSSSHDIEKMESALELKKFTENAFYDILQHHTVDEPTKEFSFLNRPTISF
IFEKHDLDKLRYLLRKNLRKAICSVYGLQALNWLLRTVTQTMCVHDIMWWFISSLVQTKN
DNENVLKLEDSDVSYEHPVAISNVDDRIQNMLSQNLHMLLQSIADITLALPSGSAIQRLA
IQCFGIKFRQSDHQFLHSSHVFGNISKILSKSEEFNEENLLYSTAMGEMHENQLDESNVK
TAKDKVTVYNHIDITEVFEFIISSRQAMVGALTDNSTETFWESDDEDRNKPKIIEISMIK
PHYVCKSINIHIDNCRDLAHKITSFSIYTGASLGELNLLETVETESNIGTWYSVLIKDES
NTHFRIELRGVENNIRIRQIKLLGYSNDTKVSQEAACAIKKQTNAHHITQKYCELETLRV
FRVLTNQVFGKLIINQERPSSHQHFTTSLIESHMDSPGVDSLDLREHMVGILFSRSKLTH
LQKQIIVHIVHSIQKETQKSREEWENHVNTISSSTIFKSTMSTSEAIMPKSNDVYCFEML
SMVSALSGSSVGRSYLSHQVDLIKDLLILLHTGSERVQRQVTLLLRRILPEISPETLCNI
MEIQYNPHRDINSLLQNPKQLNPNCMGIIDILLAIIAKSLQIQVKFKNGANPLNNKNVTV
KLCDYIMPTTHSIASQRLIPAYQHQISGGTDVGSNMSNSSREYDSIDKSAISVRDEGKKR
WFLCGTASTKLAENIICLIKDMINGKLSEKWSNVTKTAVAECIINLAHLDEVHRQPEMCL
KTPTIWLALASLCVLNEDHVMKLSSGQWSKTGDNKRPLCINHDDSITNAVIECIECGTLC
CDCDRFLHLNRKTWNHHRTVCKEEEESIKVELHESCGRIKLFWLLGLADSKTLKGIIEFR
DGHNIIICDPQNAIGRCRFCGVYGNSGLLSVGNVCVEQQCQEYSANACSKILACGHFCGG
IINESSCLPCLHQKCQSAANFDPKKPRLTQDGDDMCMICFTEALSCAPSIQMLCGHIYHY
HCSQTILQKRWNGARISFAFSQCPICKNDIYHESLKDLLEPINALKEDVKRKAVMRLKYE
GIDKEMIDDHKDLATYAMERYAYYVCCKCQKAYYGGEARCDVELGENFNPEELVCGGCSD
IAKAQMCPKHGMDFLEYKCRYCCSVAVFFCFGTTHFCDTCHDDFQRLTNIPKIKLPKCPA
GPKATQLMGDECPLHIVHPPTGEEFALGCGICRNFHTF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g12891.t1 CDD cd19799 Bbox2_MYCBP2 1957 2005 0.0000000
17 g12891.t1 CDD cd16463 RING-H2_PHR 2133 2187 0.0000000
11 g12891.t1 Gene3D G3DSA:2.60.120.260 - 1373 1535 0.0000000
12 g12891.t1 Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain 2123 2198 0.0000000
5 g12891.t1 PANTHER PTHR45943 E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 811 2378 0.0000000
3 g12891.t1 Pfam PF00630 Filamin/ABP280 repeat 91 228 0.0000002
4 g12891.t1 Pfam PF08239 Bacterial SH3 domain 267 320 0.0000001
2 g12891.t1 Pfam PF03256 Anaphase-promoting complex, subunit 10 (APC10) 1377 1507 0.0000002
1 g12891.t1 Pfam PF13639 Ring finger domain 2134 2187 0.0000013
14 g12891.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 197 236 10.1640000
15 g12891.t1 ProSiteProfiles PS51284 DOC domain profile. 1370 1549 13.7540000
13 g12891.t1 ProSiteProfiles PS50089 Zinc finger RING-type profile. 2136 2187 10.2760000
9 g12891.t1 SMART SM01337 APC10_2 1391 1539 0.0000000
10 g12891.t1 SMART SM00184 ring_2 2136 2186 0.0004600
7 g12891.t1 SUPERFAMILY SSF81296 E set domains 77 228 0.0000000
6 g12891.t1 SUPERFAMILY SSF49785 Galactose-binding domain-like 1325 1525 0.0000000
8 g12891.t1 SUPERFAMILY SSF57850 RING/U-box 2131 2195 0.0000024

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values