Gene loci information

Transcript annotation

  • This transcript has been annotated as Kinesin-like protein Klp10A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12901 g12901.t2 TSS g12901.t2 26789483 26789483
chr_1 g12901 g12901.t2 isoform g12901.t2 26789615 26799311
chr_1 g12901 g12901.t2 exon g12901.t2.exon1 26789615 26789669
chr_1 g12901 g12901.t2 cds g12901.t2.CDS1 26789615 26789669
chr_1 g12901 g12901.t2 exon g12901.t2.exon2 26793954 26794156
chr_1 g12901 g12901.t2 cds g12901.t2.CDS2 26793954 26794156
chr_1 g12901 g12901.t2 exon g12901.t2.exon3 26796026 26796092
chr_1 g12901 g12901.t2 cds g12901.t2.CDS3 26796026 26796092
chr_1 g12901 g12901.t2 exon g12901.t2.exon4 26797137 26797222
chr_1 g12901 g12901.t2 cds g12901.t2.CDS4 26797137 26797222
chr_1 g12901 g12901.t2 exon g12901.t2.exon5 26797292 26797524
chr_1 g12901 g12901.t2 cds g12901.t2.CDS5 26797292 26797524
chr_1 g12901 g12901.t2 exon g12901.t2.exon6 26797584 26797935
chr_1 g12901 g12901.t2 cds g12901.t2.CDS6 26797584 26797935
chr_1 g12901 g12901.t2 exon g12901.t2.exon7 26798006 26798836
chr_1 g12901 g12901.t2 cds g12901.t2.CDS7 26798006 26798836
chr_1 g12901 g12901.t2 exon g12901.t2.exon8 26798927 26799110
chr_1 g12901 g12901.t2 cds g12901.t2.CDS8 26798927 26799110
chr_1 g12901 g12901.t2 exon g12901.t2.exon9 26799172 26799311
chr_1 g12901 g12901.t2 cds g12901.t2.CDS9 26799172 26799311
chr_1 g12901 g12901.t2 TTS g12901.t2 26799965 26799965

Sequences

>g12901.t2 Gene=g12901 Length=2151
ATGGAGGGCTGTTCGATTGAAGTCGGAAACAGTGTAAACATTAAACGAAGTGATGGCCGT
GTACATTCAGCAATGGTATCAAAGCTGAATCAAGCTCAGCGTTCAGTGACTGTGGAATGG
TATGAACGAGGCGAGACCAAAGGCAAAGAGGTTGAACTAGATATACTACTGGTATTAAAT
CCTGAACTTATTCAAAATAAGCAGTCAACCATCATTCAACCTTCATCTCAAATACAAGCA
CCAATTAACTTGCAACGAAATCAAACACAAGGAAATATACAAAGATTAACGCGAGCCAAT
AATACTTCAAGTGCAGCTCTAAATGGAAATCGAATCTCAAAAATTGGAACATCTACAACT
ATTCACAACAATCAGGATCATTCCGAAAACGTACCTCCACAGGCCAAGAAGGTTACAAAT
AATCGAATGTTAGTGACACAACAACAACAACAGACAAATCAACAACAGCAAGCAATGTCA
AAAGCAGCAGCATCACGACGCTCATATGTAGTTAGTGAAGTTGAACGATTAAAAGAGAAT
CGTGAAAAAAGACGTGCTCGACAATTGGAAATGAAAGAGGAAAAGACAGCTTTAATGAAT
ATGGATCCTGGTAATCCTAATTGGGAGCTTGCTGCTATGATTAGGGAATATCAATCGACA
ATAGATTTTCGGCCCTTAATTGATGGTCTAGCAATAGAAGATCATCAAATTACTGTTTGT
GTGAGAAAAAGACCATTGTCGAGAAAAGAAATTATGAAAAAAGAGCTAGATGTGATTTCG
GTTCCCTCAAAAGATACTTTGATTGTACACGAACCAAAAACAAAAGTCGACCTTACAAAG
TTCCTGGAGAATCACAATTTTCGATTCGATTATGCTTTCGATGATACCTGTAATAATGAG
TTGGTTTATAAGTATACGGCTAAACCTCTCGTACAGACTATTTTTGAAGGTGGTATGGCT
ACATGCTTTGCCTATGGACAAACCGGCTCAGGAAAAACGCATACAATGGGTGGAGATTTC
AATGGCAAAGTACAAGATTGTAAGACGGGCATTTACGCTATGGCAGCAAAAGATGTTTTT
ATGTTCCTTCGAGGTCCAAAATATCGTCATTTGAATTTAACAATTTCGGCTTCATTTTTT
GAGATTTACAGTGGCAAAGTTTTTGATTTGTTATCTGAAAAGAATAAATTAAGAGTTTTA
GAAGATGGTAAACAACAAGTTCAAGTTGTGGGATTAACGGAACGTGTAGTAGATAATGTT
GAGGAAGTATTAAAATTAATTCAACATGGAAATGTAACAAGAACGTCGGGTCAGACATCG
GCGAATGCCAATTCATCACGCTCACATGCCGTCTTTCAGCTCGTCTTACGACCCGCAGGT
TCGGCAAAAATACACGGAAAGTTTTCTTTCATTGATTTGGCGGGCAATGAACGAGGCGCA
GATACAAATTCAGCCAATCGTCAGACGCGAATGGAGGGAGCTGAAATCAACAAGTCATTG
CTTGCGCTTAAAGAGTGTATTCGTGCTTTAGGCAGGCAAAATGCTCATTTGCCATTCCGT
GTAAGTAAATTAACTCAAGTTCTACGAGATTCCTTTATTGGAGAGAAAAGTAAAACATGT
ATGATAGCAATGATCAGTCCGGGACTGTCATCTTGTGAACACACTCTTAACACTTTACGA
TATGCAAATCGTGTTAAAGAATTAGTAGCAATAGATCCATCTGAACGAAATGAAATGATC
GATGATGAAGAACCAATGGACTCAGAACCAAATGAGCAGAATGGAAATGGAAAGAAAATG
GATCTGTCACAGTTGCGCTCACTTAATCCTTTCCAAGAGCACGACATTAGTGTAGAATTG
TATAATCAGCATGCTGCCATTTCGGAGCTACAACAAGTTGAAGATGAAACGATTGATCAA
TTGAAATTACTCGCTGAATTTTATACAAAATCCTTACCCGAATTAATGGAATTATGTAGA
ATGACAAATAACCCTGATTATGATCAGGATGCATTTTGTAAACGAGGAAACGAGCTTTTG
CGACAGCTATTCTTTTATGCTCAGCCGTGTGCAGATTTGTTAACCGATTTTCAATCAAAA
ATTGAAAAAGAAGAAATGATATCACATAAAATGATGCCTGGAAAACGCTAA

>g12901.t2 Gene=g12901 Length=716
MEGCSIEVGNSVNIKRSDGRVHSAMVSKLNQAQRSVTVEWYERGETKGKEVELDILLVLN
PELIQNKQSTIIQPSSQIQAPINLQRNQTQGNIQRLTRANNTSSAALNGNRISKIGTSTT
IHNNQDHSENVPPQAKKVTNNRMLVTQQQQQTNQQQQAMSKAAASRRSYVVSEVERLKEN
REKRRARQLEMKEEKTALMNMDPGNPNWELAAMIREYQSTIDFRPLIDGLAIEDHQITVC
VRKRPLSRKEIMKKELDVISVPSKDTLIVHEPKTKVDLTKFLENHNFRFDYAFDDTCNNE
LVYKYTAKPLVQTIFEGGMATCFAYGQTGSGKTHTMGGDFNGKVQDCKTGIYAMAAKDVF
MFLRGPKYRHLNLTISASFFEIYSGKVFDLLSEKNKLRVLEDGKQQVQVVGLTERVVDNV
EEVLKLIQHGNVTRTSGQTSANANSSRSHAVFQLVLRPAGSAKIHGKFSFIDLAGNERGA
DTNSANRQTRMEGAEINKSLLALKECIRALGRQNAHLPFRVSKLTQVLRDSFIGEKSKTC
MIAMISPGLSSCEHTLNTLRYANRVKELVAIDPSERNEMIDDEEPMDSEPNEQNGNGKKM
DLSQLRSLNPFQEHDISVELYNQHAAISELQQVEDETIDQLKLLAEFYTKSLPELMELCR
MTNNPDYDQDAFCKRGNELLRQLFFYAQPCADLLTDFQSKIEKEEMISHKMMPGKR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g12901.t2 CDD cd01367 KISc_KIF2_like 236 566 0.0
10 g12901.t2 Coils Coil Coil 174 194 -
9 g12901.t2 Gene3D G3DSA:3.40.850.10 Kinesin 206 571 1.6E-137
14 g12901.t2 MobiDBLite mobidb-lite consensus disorder prediction 574 597 -
2 g12901.t2 PANTHER PTHR47971:SF14 KINESIN-LIKE PROTEIN 23 711 3.7E-224
3 g12901.t2 PANTHER PTHR47971 KINESIN-RELATED PROTEIN 6 23 711 3.7E-224
4 g12901.t2 PRINTS PR00380 Kinesin heavy chain signature 317 338 6.7E-29
7 g12901.t2 PRINTS PR00380 Kinesin heavy chain signature 439 456 6.7E-29
6 g12901.t2 PRINTS PR00380 Kinesin heavy chain signature 467 485 6.7E-29
5 g12901.t2 PRINTS PR00380 Kinesin heavy chain signature 517 538 6.7E-29
1 g12901.t2 Pfam PF00225 Kinesin motor domain 242 567 2.0E-94
13 g12901.t2 ProSitePatterns PS00411 Kinesin motor domain signature. 466 477 -
15 g12901.t2 ProSiteProfiles PS50067 Kinesin motor domain profile. 236 568 105.828
12 g12901.t2 SMART SM00129 kinesin_4 234 574 4.3E-133
8 g12901.t2 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 208 568 5.8E-114

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:1990939 NA NA
GO:0007018 microtubule-based movement BP
GO:0005524 ATP binding MF
GO:0003777 microtubule motor activity MF
GO:0008017 microtubule binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values